RNA id: AMCG00002625


Basic Information

Item Value
RNA id AMCG00002625
length 2531
RNA type mRNA
GC content 0.37
exon number 2
gene id AMCG00002625
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 23033808 ~ 23036859 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTAGGATTAGTCAGTCTCTTTTCCCATTGCTCATTCTGGCAGCCagcataataaacacatttgcaatgATGCACTGGAACTAAAATAGAGAGCCGGCATTATTTAAGAGGCTCGAGACCACACGGCGAGAACTGTCATTCAACGGCAGCACGGAGCCAACcgccataaaaaaacaattatcccCATCAACCAAGAGTCTTATCCTCCCAAAATGCATTCCTCTAATGCAAAGGATAACCCCTGTCTGTTCAACGCCTATTGTGATGTAAAGGAGAACAATGAGCTGAGGAAGGAGTCCTATAAATCAACGTGGCTGGATCTGGTCATGGAAAGACGCCCTGAGGAAAAGACGACTCTCTTTGAAAATGACATGTCGCGGAAGGAGACCTACGAGAAGAAGCACATCGCTTATTTTCTAGTACAGAGACACCCCGCCCAGAAGATAAAGCTGGGGAGACTGGGGGAGAAGATGAAGGAATACCAGCTTCCATACAAGCTGCCTCTACCCATCTTTGTGCCCAGCAAAGCTGTGTCCTCAAAGGAGCGTGACCGGGCACCCACGCCAGCAGAACTGAAAGGCATCATGGAGTTCGAGAGTGCCTTGTCCAGCGGCCTGagcagagacaggagagaaCTATCTGAGATCAAGAAAGAAATGCCCAAAGTGATCCAGCCTAACCAGTTAAGCTTCAGAGCCTCCAGTCTCATTTCTCCCCCCAATGTGCCTGGCCAGTTTGAGGCTGTCCAAAGAAGCTAGTGCTGGATCTTGGGTCAATTCAATAGGGGGATACATTTCACTCCACTCTCACAGCTTAAAGACTTACATGCTATTAGGATGTAAGTGTTGATGCGATACAAATTCGAGACTAATACGGTgcattgtttattacatttcccACTTTATACACATTCAATTATATGTCATTTGTGTCAGACTGTTATTCTATACACTTTTCATAAGAACTAATGTCTCAGAGCTCCCTGTACAAGCTGCTATGAAGCCTGATGATGGGGTTTCATGCACCGAAGACTCGCATCtcacattttaacattgagAAATTCTTAGAACAGCTATTACAGAGtcattgaaaacacacacatgagaCAAAACATAACAAGGAAAATGCACTTATcttacatttgaatacattatggTGTACCAATAATGTGAATTCTACATCTATCATGATTACTGTCTTAACATGGTAAATATGGGTTTGTTGCATTCAAACTGAaactgtatgtttttgtgtgtgaaaggcaTAGACTTAATGGctattttaatgaaactgaaagattacttaaacagacatttgcattttacaaagcGGAATTTTGGTTTTATGTCTTAATCAGAGACAACTCAGCATTTTTtgcacattcttaaaaaaaagctATACTGAACTACTGTTGTAGTTAATAACCTCAACATCCTTGCATGAAAAGAAGGTGTTATGGTTTTTGAATGCATCACCAGCACAACTTATGTATCAACATACtgccaggaaataaataataataacatagtCATGACAATACGCAAAACCAAccaaaatctaaaaataacagaattgaAGTAGAgtgttgaaatatgtttttcagaaaGTATTGTGAAAGTTCCCAGTGTAAGTGTTTTGAGAGTGTCCGTAATCCTGGTTACTAATCTCATTTAATGACATTAATACTGGATCAGTTGAGTCAGATAAAAAGAAAGTTATGAAATTGTGAAAggttgaaaaagaaagaatttTGTCATGTATATTAGCCTTAGATATAAGCACCTTCAattctttgtttaaatgtgCAATATAGGGGTTTGGATTTATTGTCTGTCTGCAATtccttattataataataacaattatgtGAAATATTCTTTGTGAGCAATTCATCTTCAAGGGAAGAACAGTTACCTAATAAAgctattcaaataatttaatttttttattgaatacattttcgtCTGTGAAAGATATTATTTTGatctttaactgaaattgattttacttgaacaatatattataaaaggtttgtccaaataaaataataactacaaATAAGTGATTCACTGTGATAACAAACACTCAGCCTGTACAAAGTCAATTCCCCTTGCACTATGGTACAGAGGGGTGATACAGATGCACAGTTGAAGACCACAATGATCTGacttatgaatttattttttatctgcagCATAAACTGTGGCCACCTTGTGGAGAAAAAACATAGCAGTGTGGTAGTGAAGCGCCCCCTCTTCACAGTGCTGTGATTCAGCTATAATCTGGTTAAATCTGAATGTTACAATACATCCTTCCTTTTCAATACCTTATGAAATGGGAAATAATCCGGccattagaagaagaaaaaacacatcctGAATACAAATAGCAttatggaaacaaataaaataaacttgctttataaacaaatgttttaaatctaaatcaCTACACATTAACCTTAAATTATGTACCTTATTTATACACGTTCAATTATAGCAATTtggatgaagaaaaataaaaacatgttgg

Function

GO: NA

KEGG:

id description
K19879 TCAP; telethonin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156251 lncRNA downstream 34700 22996819 ~ 22999108 (-) True G124669
TU156157 lncRNA downstream 380089 22653482 ~ 22653719 (-) True G124591
TU156148 lncRNA downstream 435253 22597999 ~ 22598555 (-) True G124582
TU156091 lncRNA downstream 595079 22436886 ~ 22438729 (-) True G124535
TU155970 lncRNA downstream 1080137 21941177 ~ 21953671 (-) True G124434
TU156319 lncRNA upstream 101759 23138618 ~ 23296115 (-) False G124719
TU156386 lncRNA upstream 619125 23655984 ~ 23663572 (-) True G124765
TU156401 lncRNA upstream 836819 23873678 ~ 23928150 (-) True G124779
TU156515 lncRNA upstream 1374170 24411029 ~ 24411336 (-) True G124873
TU156550 lncRNA upstream 1539306 24576165 ~ 24577131 (-) True G124907
AMCG00002626 mRNA downstream 5461 23018946 ~ 23028347 (-) True AMCG00002626
AMCG00002627 mRNA downstream 21112 23000727 ~ 23012696 (-) True AMCG00002627
AMCG00002628 mRNA downstream 37288 22990253 ~ 22996520 (-) True AMCG00002628
AMCG00002617 mRNA downstream 47237 22971505 ~ 22986571 (-) True AMCG00002617
AMCG00002614 mRNA downstream 65115 22959715 ~ 22968693 (-) True AMCG00002614
AMCG00002629 mRNA upstream 145072 23181931 ~ 23192656 (-) False AMCG00002629
AMCG00002632 mRNA upstream 384939 23421798 ~ 23471546 (-) True AMCG00002632
AMCG00002633 mRNA upstream 641083 23677942 ~ 23682594 (-) True AMCG00002633
AMCG00002634 mRNA upstream 740830 23777689 ~ 23787869 (-) True AMCG00002634
AMCG00002638 mRNA upstream 1003482 24040341 ~ 24045879 (-) True AMCG00002638
TU155250 other downstream 5044343 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 6194086 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 8087497 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 9379572 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 10004402 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 49135 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 145062 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 1224706 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 1254928 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 3267023 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile