RNA id: AMCG00002626


Basic Information

Item Value
RNA id AMCG00002626
length 2612
RNA type mRNA
GC content 0.49
exon number 15
gene id AMCG00002626
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 23018946 ~ 23028347 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGATTCAAAGATGGTACATCTGTAGTATGAACGGAAGAGAGGATGTGGGTTTGTTCTGGCGCATGCGCATTGAACCGTGTAGCGAACATCATGGCTGCGCTGTGTGCTGCTTCTCGGATTCTTGCGAGGAGAGTCCTGTCATCTAAAACTCTCCCAGCATGCTACCAGGGCACTTCTCGGACGTTTCACTTCACCGTCGATGGGAAAAAGGCTGCTAAAGTTTCAGATGCAatcTCTACGCAGTACCCTGTGGTAGACCATGACTTTGATGCAGTTGTGGTGGGGGCAGGTGGCGCCGGATTGCGAGCTGCATTTGGGTTGTCAGAGGCTGGTTTCAACACTGCCTGCATTACAAAGCTCTTCCCTACAAGATCTCACACTGTGGCAGCCCAGGGTGGTATTAATGCAGCCCTGGGGAACATGGAAGATGATGATTGGAGGTGGCACTTCTATGATACAGTGAAGGGATCTGATTGGCTGGGAGATCAGGATGCCATCCATTATATGACCGAACAGGCCCCAGCAGCAGTTGTTGAGCTGGAAAATTTTGGGATGCCATTCAGTAGGACAGAGGACGGGAAGATTTACCAGCGTGCTTTTGGGGGACAGAGCCTGCAGTTTGGGAAGGGGGGCCAGGCTCACAGGTGCTGCTGTGTGGCTGACCGGACTGGACATTCACTGTTACACACACTCTATGGGAGGTCCTTGAAATATGACACCAGCTACTTTGTGGAGTATTTTGCTTTGGATCTTCTGATGGAAAATGGCGAATGTAGAGGAGTCATAGCTCTCTGTATGGAAGATGGATCAATCCACCGGTTCAGAGCAAAAAACACTGTCATAGCTACAGGGGGTTATGGCCGAACCTTTTTTAGCTGCACGTCGGCCCACACCAGCACAGGGGACGGTAACGCCATGGTCACCAGAGCTGGCCTGCCTTGCCAGGACCTGGAGTTTGTGCAGTTCCACCCAACCGGTATTTATGGGGCCGGATGTCTGATCACAGAAGGCTGCCGAGGTGAGGGGGGTATTCTCATTAACAGCGAAGGAGAGAGGTTTATGGAGCGGTATGCCCCTGTCGCGAAGGACCTTGCCTCTCGGGATGTCGTGTCCCGTGCCATGACCATTGAAATCCGAGAAGGAAGAGGCTCTGGGCCTGACAAAGATCATGTGTACCTGCAGCTCCATCACCTCCCTCCCCAGCAGCTTGCCACACGCTTGCCTGGGATCTCGGAGACCGCCATGATCTTTGCTGGAGTTGACGTCACCAAGGAGCCCATCCCAGTTCTTCCTACTGTTCACTACAACATGGGAGGAATCCCTACCAACTACAAGGGCCAGGCCATTACCTACGAGAACGGTCAAGATAAAGTGGTGCCAGGACTGTACGCCTGCGGAGAAGCTGGCTGTGCCTCTGTCCACGGGGCCAACCGGCTCGGCGCCAACTCCCTCCTTGACTTGGTGGTGTTTGGCCGTGCCTGCGCCCTGACCATTGCAGAAAACTTCAAGCCTGGAGAAACTCTTCCAGACCTCAAATCAAATGCTGGAGAGGAGTCTGTAGCCAACTTGGATAAACTGAGATTTGCGAATGGCAACATTAGAACGTCTGAGATCCGTCTCAACATGCAGAAGACAATGCAGGCGCACGCAGCGGTGTTCCGCACCGGCCCAGTCCTCAAAGAAGGATGTGAGAAAATTGATTCCATCTTCAAATCGATGGCAGACATCAAGACATTTGACAGAGGCATCGTGTGGAACACTGACCTGGTCGAGACTCTGGAGCTGCAGAATCTGATGCTGTGCGCCCTGCAGACCATCAACGGTGCCGAGGCACGGAAGGAGAGCCGGGGTGCGCACGCCAGAGAGGACTTCAAGCAACGCATGGATGAATACGACTATAGCAAACCCCTACAGGGCCAGCAGAAGAAGCCCTTCAGCGAGCATTGGAGAAAGCACACCCTGTCTTACGTGGATGCCAGTGGGAAGGTGACTCTTAAATACCGGCCTGTGATTGACCATTCATTAAGTGAGGAAGAGTGCTCCGCCATCCCCCCTGCCATCCGCTCCTACTGAGCTGCCAAACTGTAACTTTGCATTAGTCAGAACTTGTAACAGCGGATAAatgttggattttgttttgttcttgtactgtactatactggcGAATACTACACATAGGAATGTTACTTATTTCCTTAGAAGACATAAAGTACTATTATGGTATTCCGTGCATTGTGgtttaaagtatattattgATATCTGATTTGAATTATTCTAAtgtagaataaaacaaagttaaacTGTATGCAGACATTGGAATACTTGGAGCAATCGTGGTTAAAAAGCTGCCACCTTGAGAAAAGCAAAACcttgtatgtaaataaaatacatttttcactcaTTCTCGCCTTTCTTAATGggataatacaaatgtatttaaagtggTGTGTATCCTGCATGCTTACTGCTTactggatttatttaaaatctcaaTAAAAAGGCTACGAATCTTCCTTTATGCCTGACATTGTGTGCTTGGGCAGTGTTGTGGAAATGTACATAAACATGCAGAGAGATGGgctgaaatataatttatgtaagTATTTACCAAT

Function

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0006105 succinate metabolic process biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0006810 transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0008177 succinate dehydrogenase (ubiquinone) activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function

KEGG:

id description
K00234 SDHA, SDH1; succinate dehydrogenase (ubiquinone) flavoprotein subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156251 lncRNA downstream 19838 22996819 ~ 22999108 (-) True G124669
TU156157 lncRNA downstream 365227 22653482 ~ 22653719 (-) True G124591
TU156148 lncRNA downstream 420391 22597999 ~ 22598555 (-) True G124582
TU156091 lncRNA downstream 580217 22436886 ~ 22438729 (-) True G124535
TU155970 lncRNA downstream 1065275 21941177 ~ 21953671 (-) True G124434
TU156319 lncRNA upstream 110271 23138618 ~ 23296115 (-) False G124719
TU156386 lncRNA upstream 627637 23655984 ~ 23663572 (-) True G124765
TU156401 lncRNA upstream 845331 23873678 ~ 23928150 (-) True G124779
TU156515 lncRNA upstream 1382682 24411029 ~ 24411336 (-) True G124873
TU156550 lncRNA upstream 1547818 24576165 ~ 24577131 (-) True G124907
AMCG00002627 mRNA downstream 6250 23000727 ~ 23012696 (-) True AMCG00002627
AMCG00002628 mRNA downstream 22426 22990253 ~ 22996520 (-) True AMCG00002628
AMCG00002617 mRNA downstream 32375 22971505 ~ 22986571 (-) True AMCG00002617
AMCG00002614 mRNA downstream 50253 22959715 ~ 22968693 (-) True AMCG00002614
AMCG00002615 mRNA downstream 60026 22955276 ~ 22958920 (-) True AMCG00002615
AMCG00002625 mRNA upstream 5461 23033808 ~ 23036859 (-) True AMCG00002625
AMCG00002629 mRNA upstream 153584 23181931 ~ 23192656 (-) False AMCG00002629
AMCG00002632 mRNA upstream 393451 23421798 ~ 23471546 (-) True AMCG00002632
AMCG00002633 mRNA upstream 649595 23677942 ~ 23682594 (-) True AMCG00002633
AMCG00002634 mRNA upstream 749342 23777689 ~ 23787869 (-) True AMCG00002634
TU155250 other downstream 5029481 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 6179224 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 8072635 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 9364710 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 9989540 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 57647 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 153574 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 1233218 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 1263440 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 3275535 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile