RNA id: AMCG00002627


Basic Information

Item Value
RNA id AMCG00002627
length 2757
RNA type mRNA
GC content 0.52
exon number 21
gene id AMCG00002627
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 23000727 ~ 23012696 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAGTCCTGCTCAAGATTGCCTTCCTCTTGTGGACAGTGCAGCTGTCTACCCAAGACCCTGAGGCTGAAAGTCTCCTCATAAGGCCCAGGAATTTGAAAGGCAATGACGACTGCCCTATCAACGTATACTTCACCGTGGATACCTCAGAGAGCGTGGCACTCAAGGAGTATCCCTGGGGCAGCCAGGTGGACGAGCTGAAAGTGTTCCTCGAGATGTTTGTGCAGAAGCTGCAGGGGAGCACCCTGCAAGCCAAGAAGGTGAAATGGTCCTTCGGGGGACTGCATTTCTCAGACCGGGTTGAGGTCTTCAGTCAGATAACTACCGACACCACTGCCTTCCTGACGAGGGTGAGAAATATCAGGTACATCGGAAGAGGGACCTTCCTGGACTGCGCCCTGAGGAACCTGACGGATCAGGTCCGGAAAGCGTACTCCTCAGTGAAGCCGCAGCTACAGTTCGCCGTGGTCTTGACCGACGGGCATATCACAGGGAACCCCTGTGGAGGAGTCCAGCAGGCCACTGAAGCAGCCAAAGCTGCAGGCATTAAGATCTTTGTGGTGGCGACCAGCGATGACACGATGGAGAGCGAACTAAAACAGATCGCAAGTTCTCCCGTCGAGCTTTACCGCAAGGATTACTTGGCCTTCCCAAAAAACCGGAGGCAACTGGCGGTTAACAAGATCACTGACACAATGGCAAGTATGACCAAGGCTGTAAACGAAGGTGAATCTGAGGGTGCCAAGGGAAGCTTTGGCACTATTGGTGATGCAGGCACCACTGGACAAAGGggagACCCTGGAATAGAAGGTCCAATAGGTTTGCCTGGGTCTAAGGGACAACCTGGAAATTCTGGATACAATGGGATAGATGGCATAAAGGGAGATATGGGGCCAGCAGGTGACTTTGGAGTAAAGGGTGAAGCTGGAGATCCAGGGGACAAGGGTTTTGCCGGACAGAGTGGCAGACCTGGAATGACGGGATTGAAGGGACTGCATGGAGAAAAGGGTGTCCTCGGCTACATCGGAAATCCAGGTCTTCCGGGTCAGAAAGGATCGAAGGGGATGCCAGGACTTCCTGGGGATGTGGGTGACCTTGGTACAAGAGGTGACAGTGGGGCATCGGGTCTACGTGGTAAGACAGGGGGCAAAGGTGATAAGGGAGAAGTAGGcccagagggagagagaggtatgCCTGGAAACATGGGAGAGAACGGGGTCATGGGGTCCAACGGGGAGGCAGGTGATTTTGGACCAAGAGGAGACACTGGGGATCCAGGGGCCAAGGGGGACCAAGGAAAAGACGGCTACAACTATGTGGGTCCTAGAGGAACACAGGGGTCTAGAGGGTATTATGGAGAGAAAGGAGGACATGGCCCTAAAGGAACCCCAGGAGATGCAGGAGATCCAGGCCCCGAGGGGGAGCCAGGCGACAGAGGGGTGAGAGGTCAGCCTGGACCACCTGAGTGCGAAATAATGGGATTTGTGAGAGAAACATGTGGTTGCTGTGACTGTGAAAAACTGTGCCCTGCTGTGGACCTAGTGTTTGTGATTGACAGCTCGGAAAGTATTGGAAAATCCAACTTCAGCCTTGCCAAAAACTTTGTTATCAGTGTGGCAAACAGACTAGGGAAAATGGCAAAGAATATTTCTGATGTATCAGGTTCCCGGCTGGGGGTAGTGCAGTACAGCCATCAGGATGCTGTACAGGCGATACGGATGGATGATCCGGATGTAACATCGATCACCAGTTTCAAAGCCAAAGTCAAAGCAATGGAGTGGATAGCCGGGGGGACATGGACACCCTCTGCCCTGAAGTTCACCTACGATAACCTGATAATGCCAGGGAGACGACTGCGCACCAAGGTGGTGGCCATTGTCATAACAGACGGACGTTACGACCCCAAAGACGTGGACAACCTGGAAGCCCTTTGCAAAGGAGTGGAGGTGTACGCCATTGCAATTGGCGACATGTTTGACACCAGTGCAGAAAGACAGTCTTTGGAGAAAATCGCCTGCAATACAGGTGACAGAGTGAAGACGCTCAGCGTGTATGCCGATCTGACTGCAGAAGAGTTCCTGGAGGAAATTGAACAAATCCTTTGTCCAGAAGCCGATCATATCTGCCCAGACATGAAATGTTCCACAGCTCTCCAGGTGGCTCCTCTTGTGCAACGCCCCGTTGACATCCTGTTCCTAGTGGATGGCTCAGAAAGAACCGGAGCCGAAAACTTTGGCTCTGTCCTGCACTTCATCGAGCAGGTCTCTCAGGAGATCAGGCTGGCCAGGAAGGAGAATGACTATAAAGGAGCACGTCTAGCTGTGCTGCAATATGGAGGGGAGCAAGAGCCAGATGTGCTGCTAGATTTCTCTCACAGTGAGACCACCATTCGCTCCCTCATCAGCAAGGCTGTTTATCGAGACTCGTCCTCCGTGTTAGGAAATGCCATTCTGTTTGCTGTAGATAATGTAGTGAACAACCGTAACAGTCAATTCAGAGGAGTGCGGAAGAACGCCGAGGTCTCCTTTGTCTTCGTCACAGATGGCATAACTCGTGACCAAAACATCGAGGAAGGCATAGAAGCCATGAGGAAGGCAAACGTGGTCAGCTCTGCAATTGCCGTTGGGCCCGATGTGGACCACAACATATTAGCTCAACTGGTTTTCAAAGATAAAGCCCTGATTTTTCATCTGAAACGCTACGCTGACCTGGTTTCCACAAGAGTTGTCAAACACATTGTGCATTGTCTCGGCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156251 lncRNA downstream 1619 22996819 ~ 22999108 (-) True G124669
TU156157 lncRNA downstream 347008 22653482 ~ 22653719 (-) True G124591
TU156148 lncRNA downstream 402172 22597999 ~ 22598555 (-) True G124582
TU156091 lncRNA downstream 561998 22436886 ~ 22438729 (-) True G124535
TU155970 lncRNA downstream 1047056 21941177 ~ 21953671 (-) True G124434
TU156319 lncRNA upstream 125922 23138618 ~ 23296115 (-) False G124719
TU156386 lncRNA upstream 643288 23655984 ~ 23663572 (-) True G124765
TU156401 lncRNA upstream 860982 23873678 ~ 23928150 (-) True G124779
TU156515 lncRNA upstream 1398333 24411029 ~ 24411336 (-) True G124873
TU156550 lncRNA upstream 1563469 24576165 ~ 24577131 (-) True G124907
AMCG00002628 mRNA downstream 4207 22990253 ~ 22996520 (-) True AMCG00002628
AMCG00002617 mRNA downstream 14156 22971505 ~ 22986571 (-) True AMCG00002617
AMCG00002614 mRNA downstream 32034 22959715 ~ 22968693 (-) True AMCG00002614
AMCG00002615 mRNA downstream 41807 22955276 ~ 22958920 (-) True AMCG00002615
AMCG00002616 mRNA downstream 73914 22909190 ~ 22926813 (-) True AMCG00002616
AMCG00002626 mRNA upstream 6250 23018946 ~ 23028347 (-) True AMCG00002626
AMCG00002625 mRNA upstream 21112 23033808 ~ 23036859 (-) True AMCG00002625
AMCG00002629 mRNA upstream 169235 23181931 ~ 23192656 (-) False AMCG00002629
AMCG00002632 mRNA upstream 409102 23421798 ~ 23471546 (-) True AMCG00002632
AMCG00002633 mRNA upstream 665246 23677942 ~ 23682594 (-) True AMCG00002633
TU155250 other downstream 5011262 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 6161005 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 8054416 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 9346491 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 9971321 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 73298 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 169225 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 1248869 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 1279091 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 3291186 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile