Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00002628 |
| length | 1239 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 8 |
| gene id | AMCG00002628 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030136.1 |
| NCBI id | CM030136.1 |
| chromosome length | 27394605 |
| location | 22990253 ~ 22996520 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0006511 | ubiquitin-dependent protein catabolic process | biological_process |
| GO:0019773 | proteasome core complex, alpha-subunit complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004298 | threonine-type endopeptidase activity | molecular_function |
| id | description |
|---|---|
| K02726 | PSMA2; 20S proteasome subunit alpha 2 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU156157 | lncRNA | downstream | 336534 | 22653482 ~ 22653719 (-) | True | G124591 |
| TU156148 | lncRNA | downstream | 391698 | 22597999 ~ 22598555 (-) | True | G124582 |
| TU156091 | lncRNA | downstream | 551524 | 22436886 ~ 22438729 (-) | True | G124535 |
| TU155970 | lncRNA | downstream | 1036582 | 21941177 ~ 21953671 (-) | True | G124434 |
| TU155967 | lncRNA | downstream | 1064397 | 21925607 ~ 21925856 (-) | True | G124431 |
| TU156251 | lncRNA | upstream | 299 | 22996819 ~ 22999108 (-) | True | G124669 |
| TU156319 | lncRNA | upstream | 142098 | 23138618 ~ 23296115 (-) | False | G124719 |
| TU156386 | lncRNA | upstream | 659464 | 23655984 ~ 23663572 (-) | True | G124765 |
| TU156401 | lncRNA | upstream | 877158 | 23873678 ~ 23928150 (-) | True | G124779 |
| TU156515 | lncRNA | upstream | 1414509 | 24411029 ~ 24411336 (-) | True | G124873 |
| AMCG00002617 | mRNA | downstream | 3682 | 22971505 ~ 22986571 (-) | True | AMCG00002617 |
| AMCG00002614 | mRNA | downstream | 21560 | 22959715 ~ 22968693 (-) | True | AMCG00002614 |
| AMCG00002615 | mRNA | downstream | 31333 | 22955276 ~ 22958920 (-) | True | AMCG00002615 |
| AMCG00002616 | mRNA | downstream | 63440 | 22909190 ~ 22926813 (-) | True | AMCG00002616 |
| AMCG00002611 | mRNA | downstream | 284508 | 22694206 ~ 22705745 (-) | True | AMCG00002611 |
| AMCG00002627 | mRNA | upstream | 4207 | 23000727 ~ 23012696 (-) | True | AMCG00002627 |
| AMCG00002626 | mRNA | upstream | 22426 | 23018946 ~ 23028347 (-) | True | AMCG00002626 |
| AMCG00002625 | mRNA | upstream | 37288 | 23033808 ~ 23036859 (-) | True | AMCG00002625 |
| AMCG00002629 | mRNA | upstream | 185411 | 23181931 ~ 23192656 (-) | False | AMCG00002629 |
| AMCG00002632 | mRNA | upstream | 425278 | 23421798 ~ 23471546 (-) | True | AMCG00002632 |
| TU155250 | other | downstream | 5000788 | 17922452 ~ 17989465 (-) | True | G123829 |
| TU154950 | other | downstream | 6150531 | 16836156 ~ 16839722 (-) | True | G123585 |
| TU154543 | other | downstream | 8043942 | 14941260 ~ 14946311 (-) | True | G123263 |
| TU154299 | other | downstream | 9336017 | 13649228 ~ 13654236 (-) | False | AMCG00002421 |
| TU154047 | other | downstream | 9960847 | 13028197 ~ 13029406 (-) | True | G122862 |
| TU156333 | other | upstream | 89474 | 23085994 ~ 23153164 (-) | True | G124719 |
| TU156342 | other | upstream | 185401 | 23181921 ~ 23185168 (-) | True | AMCG00002629 |
| TU156457 | other | upstream | 1265045 | 24261565 ~ 24261823 (-) | True | G124829 |
| TU156479 | other | upstream | 1295267 | 24291787 ~ 24339566 (-) | True | G124848 |
| TU156949 | other | upstream | 3307362 | 26303882 ~ 26305923 (-) | False | AMCG00002688 |
