RNA id: AMCG00002629


Basic Information

Item Value
RNA id AMCG00002629
length 732
RNA type mRNA
GC content 0.50
exon number 8
gene id AMCG00002629
representative False

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 23181921 ~ 23192656 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgatGGAGATGAGAGAGGAAGAACAGCGTAGCTCCAATACTGACGGACGTTCAGTGGAAGGGGTTGACGCGCACACAGTGAACGGCTACGTCATTCACGACAGAGAGAGCAAAGCCGAGGTTGAGATTCCCTACCCGGTGGAGGAGAACCAGGTCCAGTGTGGGAGAGCATTTCACCACGGACGCTTCATCATGGGGCTGCGGCGCACAGCCTCTGCACAACCCAAtgtTAAATTCATTGAAGGCACTGTGACTAACCTGCAAGAAGAGGATGGGAGCGTCACAGGGATTCAGTACAAGGACAAAGAAACTGGGGATATCAAAgaaATTCACGCTCCTCTTACAGTGGTTGCAGATGGCTGTTTTTCCAAGTTTAGGAAAAACTTAATCTCCGGGAAAAACTCTCCACAGTTCAAGCCACATCACGCCGAACTTGTTCTAGCCAACCCCAGCCCAGTTCTCATATACCAGATCTCATCCTCTGAAACTAGGGTTCTGGTGGATATCAGAGGGGAAATGCCAAAGAACATAATTGAGTACATGGCTGAGAAGATACAACCACAGCTGCCAGAGCACTTACAAGAGCCTTTCCTCATTGCACTGCAGAATGACCGTCTGAGGACCATGCCAGCGAGCTTCCTGCCTCCCTCACCTGTGAACAAACCagGGGTCCTTCTTTTGGGAGACGCCTACAATATGAGACACCCATTGACTGGAGGAGGAATGAGTGTT

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004506 squalene monooxygenase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156251 lncRNA downstream 182823 22996819 ~ 22999108 (-) True G124669
TU156157 lncRNA downstream 528212 22653482 ~ 22653719 (-) True G124591
TU156148 lncRNA downstream 583376 22597999 ~ 22598555 (-) True G124582
TU156091 lncRNA downstream 743202 22436886 ~ 22438729 (-) True G124535
TU155970 lncRNA downstream 1228260 21941177 ~ 21953671 (-) True G124434
TU156386 lncRNA upstream 463328 23655984 ~ 23663572 (-) True G124765
TU156401 lncRNA upstream 681022 23873678 ~ 23928150 (-) True G124779
TU156515 lncRNA upstream 1218373 24411029 ~ 24411336 (-) True G124873
TU156550 lncRNA upstream 1383509 24576165 ~ 24577131 (-) True G124907
TU156640 lncRNA upstream 1755494 24948150 ~ 24948841 (-) False G124975
AMCG00002625 mRNA downstream 145072 23033808 ~ 23036859 (-) True AMCG00002625
AMCG00002626 mRNA downstream 153584 23018946 ~ 23028347 (-) True AMCG00002626
AMCG00002627 mRNA downstream 169235 23000727 ~ 23012696 (-) True AMCG00002627
AMCG00002628 mRNA downstream 185411 22990253 ~ 22996520 (-) True AMCG00002628
AMCG00002617 mRNA downstream 195360 22971505 ~ 22986571 (-) True AMCG00002617
AMCG00002632 mRNA upstream 229142 23421798 ~ 23471546 (-) True AMCG00002632
AMCG00002633 mRNA upstream 485286 23677942 ~ 23682594 (-) True AMCG00002633
AMCG00002634 mRNA upstream 585033 23777689 ~ 23787869 (-) True AMCG00002634
AMCG00002638 mRNA upstream 847685 24040341 ~ 24045879 (-) True AMCG00002638
AMCG00002639 mRNA upstream 858963 24051619 ~ 24065028 (-) True AMCG00002639
TU156333 other downstream 28767 23085994 ~ 23153164 (-) True G124719
TU155250 other downstream 5192466 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 6342209 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 8235620 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 9527695 13649228 ~ 13654236 (-) False AMCG00002421
TU156457 other upstream 1068909 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 1099131 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 3111226 26303882 ~ 26305923 (-) False AMCG00002688
TU157116 other upstream 3662237 26854893 ~ 26875246 (-) True AMCG00002705