RNA id: AMCG00002631


Basic Information

Item Value
RNA id AMCG00002631
length 1461
RNA type mRNA
GC content 0.41
exon number 10
gene id AMCG00002631
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 23652972 ~ 23677437 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgcagCGGAAAAGGACTGCAGGCCAAAACGCATCGGATTCCGCTTTGCACAATGCTAAGGTATTAcaccaattaaaatgtttcaaagctTTAATTGCGGATTACACAGTAGTAGTAGCTGCCCCCGTGTTCCATTCAAGAGGGAAGTTAATAGACATCGGTTTGGGTCAGAAGATCTATCTGACCTGCAAAGGACAAGGACAGCCTGTTGTTATGCTGGATGCTCCTACTGGTATGTCTTCGGATGTGTGGTTTCAGATACAGGAGGATCTTTCCCGGTTAACTCAAGTGTGTACATATGACAGGGCTGGACTGGGATTCAGTAAACGAGCGATGCAAAACGAGACTACAGGAATGGAAAAAGTCTGGGGAGTGTCAACAACCGGAAGAATGGTTGATGACCTTCACCGCCTTACAAAGGAAGCAAAGATTGAGAAACCCTTCATTCTGGTTGGCTCAGAGCTGGGAGCTCTCAATGGAAGATTTTACAGTCACATCCATGACTCGGAGGTTTCAGATCTTGTCCTCATTGATCCGATCCCCGAAGACATTTTTACAGAGGATCCGTGGCAGCAGTACTGGTACAAAGAGCTGGTGCCTTCCCTTCAGGCAATGCAATTTTTTGCAGCCACTGGACTGAACAGAATGCTACTGATTTTTGGATGGATGAAGCAACCAATCACAGGGGAGCACATCTCTGAGGATCTAATACAACGACAGAAATACCTACTCAGCAACCCGGCTCATCAGAGCGGCTCCGTGGATGAGCATTTCTTCCTTAATGAGAGTGTCTTTCAAGTCAGGGAAATTTCCAAATACAAACCACTTTCTAGCGGAACCTCTGTAACTGTGATAACTGGTGATTATTTTGATGAATTACTCCCAGCCCATCTGAATGAAGCTGTGGCGAAGTGTCAGAAGCAGTTGTTGGAGCAAACCTATCCgacagcaaaacattttcagatttctggAGTTGACCGGAAAATGCTGTACAGAAGTCCCTTTGCAGTGACAAAACATTTAGCGACATTGGTAAAACGCAGAAAGCCTAAACAAGAGAGCCACTAATCTCcatacagtacaaatacatttgaactttTGGAAAAACAGCCCACAAAATGTACAGGAGCCTGCAGaatatatggatatatttatttctgcatcGATACCAGGTATTCTGTTCTATAGTTCAGTCGAACGTATAGGtcattcagttaaaaaaaaaaagatttgccTGTGGAAAGcctcttttaaataattttcacaaCAGTAAGAGTTTGGGAACTGCagttcttgtgtttgttttacaaatacaatcttcttaaaaaaaaaaaaaaaaaaaaaaaattgtacagcAAGCTTTCAGTTAtgaaactgttttgaaaatgtccaAAAACAAACTTCCTTCAAAGCAGAAACCTGACTCTAATTGTTCTTTACtcgaaataaaatgtttgaaac

Function

GO:

id name namespace
GO:0030687 preribosome, large subunit precursor cellular_component

KEGG:

id description
ko03013 Nucleocytoplasmic transport

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156369 lncRNA upstream 46133 23606537 ~ 23606839 (+) True G124750
TU156357 lncRNA upstream 216652 23421973 ~ 23436320 (+) True G124740
TU156273 lncRNA upstream 376197 23218330 ~ 23276775 (+) True G124687
TU156249 lncRNA upstream 640972 23011435 ~ 23012000 (+) True G124668
TU156248 lncRNA upstream 649720 23002991 ~ 23003252 (+) True G124667
TU156392 lncRNA downstream 4576 23682013 ~ 23682226 (+) True G124770
TU156396 lncRNA downstream 152233 23829670 ~ 23829984 (+) True G124774
TU156405 lncRNA downstream 310265 23987702 ~ 24004361 (+) True G124783
TU156445 lncRNA downstream 584111 24261548 ~ 24261841 (+) True G124823
TU156459 lncRNA downstream 600997 24278434 ~ 24278640 (+) True G124831
AMCG00002630 mRNA upstream 245006 23407566 ~ 23407966 (+) True AMCG00002630
AMCG00002623 mRNA upstream 579274 23068633 ~ 23073698 (+) False AMCG00002623
AMCG00002620 mRNA upstream 585172 23056782 ~ 23067800 (+) True AMCG00002620
AMCG00002624 mRNA upstream 597256 23043824 ~ 23055716 (+) True AMCG00002624
AMCG00002619 mRNA upstream 619387 23028636 ~ 23033585 (+) True AMCG00002619
AMCG00002635 mRNA downstream 290141 23967578 ~ 23985386 (+) True AMCG00002635
AMCG00002637 mRNA downstream 319810 23997247 ~ 24007711 (+) True AMCG00002637
AMCG00002636 mRNA downstream 342067 24019504 ~ 24036531 (+) True AMCG00002636
AMCG00002642 mRNA downstream 692447 24369884 ~ 24376014 (+) True AMCG00002642
AMCG00002646 mRNA downstream 828856 24506293 ~ 24517840 (+) True AMCG00002646
TU156281 other upstream 362437 23152648 ~ 23290535 (+) True G124689
TU156269 other upstream 472929 23068124 ~ 23180043 (+) True AMCG00002623
TU155679 other upstream 3376717 20274089 ~ 20276255 (+) True AMCG00002573
TU155541 other upstream 4520614 19130403 ~ 19132358 (+) False AMCG00002561
TU155458 other upstream 4814441 18832014 ~ 18838531 (+) True G123989
TU156391 other downstream 498 23677935 ~ 23681385 (+) True G124769
TU156498 other downstream 744815 24422252 ~ 24422613 (+) True G124863
TU156924 other downstream 2598154 26275591 ~ 26278973 (+) False AMCG00002684
TU156956 other downstream 2684775 26362212 ~ 26369525 (+) True G125219

Expression Profile