RNA id: AMCG00002632


Basic Information

Item Value
RNA id AMCG00002632
length 4308
RNA type mRNA
GC content 0.45
exon number 15
gene id AMCG00002632
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 23421798 ~ 23471546 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGCTTGAGAACAGCGAGGGCTGGAATCAGCAGCTTGTGACAAGCTGGGGAGAGAGGAACATGAATGTAATGCGCACCTTGCCTCGTTTGCTTTCAGATACCGGCCAGAAGAAGACTCCAGAAAAGAAAGATGGGCGTCGGATGTCTTTCCAAAAGCCTAAAGGGACCATTGAATATTCCGTGGAATCCAGAGACACATTGAATAGCATTTCTCTGAAGTTTGACACCACTCCCAATGAGCTCGTTCAGCTGAACAAACTTTTCTCCCGTGCTGTTGTTCCTGGCCAGGTCCTGTACGTCCCTGACCCAGAGTATATCTCTAGTGTGGAgagctctccctctctcagtccCATCAGCCCTCTGTCGCCAACCTCGTCTGAAGCAGAGCTAGAGAAAGTGACGGACTCTGATGGGGCCCCTAGGAAAGAGGCCACTGCCTCCCCAGCACACGCCTGCCCCCGACCTGCCAGAGTGGTGTCATCCACCTCCGAGGAGGAAGAAGCCCTGACGGAGAAGTTTCTCAAAATTAACTGCAAGTACATCACGGATGGCAAGGGGGCGGTCAGCGGGGTGCTGCTGGTGACGCCCAACAACATCATGTTCGACCCACACAAGACAGACCCCCTTGTCCAGGAACACGGCTGTGAGGAGTACGGGATCATGTGCCCCCTGGAGGAGGTCATGTCAGCCACCATGTATAAGGAGATTGTGGACAGCAAAATCAAAGAGTCCCTGCCCCCAGATCTGGAGCACCTGGCTTCAGGGAGAGACCTCTGCCACATGAAAAGAATACCCCGGAGCAATACGGACGAGACGGAGCTGAGACTTCGGGATACAGGGAACGACAGCACCAGTACAGCGCCGCGGAGCACAGAGGAGTCCCTCTCTGAGGACGTGTTTACAGAATCCGAGCTCTCGCCAATCCGGGAGGAGCTGGTGTCTTCAGACGAGCTCCGGCAAGACAAGTCTTCAGGGGCATCTTCAGAATCCGTTCAAACCATCAACCAGTCTGGGGCAGAATGCTGCCTCACGTCCGAGAGTGGAGAACCTACCAAAACTCAAACAGAAGATGTGTCCGTCAAAGACAGCGGATCTCCAAGCCACGCAGCCCAAGTCAAGAGATCCGAATCGGAAACCAAGCCTGAGGAAAACCCTCCTCAGAGCCAAAAGAAGGAACAGTCTCCCCTGGGTTCCAAACAACACAGCATGGATAAGGAACCAAGCACACCACCCAGCAAAGAGCAGGATTCGGCATGTGAGAATGACGCGGCCAAGTCGCGTAACGCATCAGACTCTCAGTGTTTAGAGACGGCTGCTGGGGACCCATCTAACAAAGAGGAACCTGAGAAGGGCAGTGTTGTCCAGGAGCGACCCCGTGACTCGGAGACCGAGGTGGAGGAGCTGCGGAAGCTGTGGAAGAGTCATACTATGCAACAAGCCAAGGAGCAGCGGGAGAATGTacagcagacacacaaagaTATCAAGCAGAAGCCAGGGAAAGACCTAGAAGGACAGGTGCCAGCTGAAGGTTCCATTGTCTGCAAAGAGAAGAGGAGGCATAGATCTCACAAGTTCCTGTGTCTGCGGGTCGGGAGACCCATGCGGAAAACCTTCGTCTCCCATGCAAGCGCGACCATGCAGCAGTATGCACAGAGGGACAGGAAGCACGAGTACTGGTTTGCAGTCCCTCAGGAAAGGACGGACCATTTGTATGTGTTCTTCATACAGTGGAGCCCAGATATGTATGGGGAAGGAGCTGGAGGCTTGGGCAGAGAGCCGGGGTTCATGGTTGTTAAAAAGAATGAGGAATCGGAAGCAGGAGAGGAAGCACTAGCAAATGAAGCAACAGCTAAAGAATGGGAGGTAGTGTCAGTGGCTGAGTATCACCGCAGGATCGATGCTCTTAACACTGAAGATCTGCGCTCTCTCTGCAGACGTCTCAAGGTGCCCCCTTCAGTAGTTAAAACCCATTCACCCGAGACTGATATCACTACAAAGGAGGAAGTCAATTCCAAACATGGTACTTCTATGAAGACTGATTTGGAACCGGACACATTTAGACCGAATCTCAGTGAGTCCAGTGACCTCCTTCAACCAGAACAGATCGAAAAGCTGGCTAAGCATCTTCCACCCAGAACTATTGGATATCCGTGGACACTGGCTTTCAGCACTGCCAAACATGGCATGAGCATAAAGTCACTATATAGAGCAATGGCAGGCCAAGACACGCCTGTATTGATGGTCATAAAAGATAGTGATGGGCAGATCTTTGGTGCATTAGCATCAGATCCTTTCAAAGTTAGTGATGGATTCTATGGCACCGGAGAAACATTTCTTTTCACTTTCTGTCCGGAATTTGAGgtaTTTAAATGGACAGGAGACAACATGTTCTTTATAAAAGGAGATATGGACTCTTTAGCTTTTGGTGGAGGAGGGGGAGAATTTGGATTATGGTTAGATGGAGATCTGTATCATGGAAGAAGTCACTCGTGCAAAACCTTTGGCAACCATACGCTTTCCAAGAAGGAAGACTTCTACGTACAAGACATTGAAATCTGGTGTTTTGAATAACCAAACTAGATTCTAATGAAGAAATCGGTCATCCCTAAAGCAGTGGTGTCCCAAACCTGACTATGCATCACCTCAGCTCCTAGGAAGCCAGATATTAAAGCATATCTCTGTGCTTTTAATTGATACCTAATGCCTCCATTGCTACAAGCTACGTtgtccaaaaaaataaatgaaacactttttgttttacccTGCTTATAAACATGTGAAATGGTAAATAACATGTAATTTGCTGATTTGGGTCTGGTTGGATTAAGAATGAAGAACACTAGTGTAGGTGGTTTTGATAGTTCAGGTTTGGGACTGAAATGGGTGACCTTGTTAGGCCAGGGAACTGGACTGCTCCAGATGTCAAAAGATACAATTCAGGACAGAGAATCTGTGTGTACAGATAATCTCCGATCAAATCCACTTCTGGCCTCAAAGGCAGTCTGGAAGGATGAACTGATTTCCTGAGGAATCAACTGCACTTGTCAAGAAGGACTGTGACCCATTACCATGAAGTACCCGACCCTTGAGTGAAGTTTCCATACCACAATTCAACTGGGAAGAAGTATAGAATACTGTATAATAGTCCTCCTGCGTTCACTGTCATAGCACACCATCTCCAAACACATAGCTAGTATCTGGATACCCATATGTGTGATGTTCTGTCAAGTGGGTGTATGTGTGAGTTCAGCAAACACCAACTCTACACAAGAGTAGTGTGTTTGCAGTAGATTTGTGAATATGCAAATTACTGTCAGGTGACCTCAGAAATCCAAACCGACAGGCACGCTGACGAGAGAGAGCTGCAGAGGAGTGATGTGAAATGCAAAAGTTTGTTCTAGGTATGAATAGAAAAGCCAGAGTTGAGGATTGTTTTacaagaatacatatatatatatatatatatatatatatatatatattgctgttcTACGTGTGACAGTGACCTTTATTTGTGCTGATATTTCAGctgttacaaatatataatgtatattaccctgtaaattaatgttaaaatagtAGATTtgttcctatatatatatatatatatatatatatatatatatatatgaagtgtGGATTGGTGATTTGCTAATAGCACTTTAATCTAGAAGTTTAAAAGCAGAAGGCCAGGTTCTTAGGCATAATTAAAAGTAGCTGTACAGTTCTTTTCTTTGGTTAGTTCATACAGATGTTAACTGTTTATAGAAAGCTTGCTGCTATGGTATAAAAAGGGCAAATGTAATGTTCtgtattccaaaaataaaacactcagaaaataaataaataaaatgctgaatgtTGAAGAAAAATACAGGGCATCATCTTTTCCTCTTAATGTTTTGCGTCTAGTCCTGTGACTTTGTTAGTGTGTAGACGGGTGTTTACAGACTGATAGAGCTCTTGCAGTTGTAAATACAATCTAACAGCAGctttcctccccctcccctccttttGGTCTTCCACAACAGTATTATTGTCCTTGTGgagtcaaaaataataaaacaatcctGAAATGGACTACGATGTAATAGTGATGTATAGtaagaagaaataaattattgtaacCTGGGAATTGTCTGGATCAGTGGTCTTATTTCCTGAAAACTGGATCATTTCAAGTTCTTTTCATGAAGCCTATATTTATCTTGGAACCTggttttattcctttattttcatGGAAAGTTTGTGCTCATATTTTTAAGTATGGGGGGGTGTGCTCTGAGAAGCAGTGTATTGAGATTT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156319 lncRNA downstream 125683 23138618 ~ 23296115 (-) False G124719
TU156251 lncRNA downstream 422690 22996819 ~ 22999108 (-) True G124669
TU156157 lncRNA downstream 768079 22653482 ~ 22653719 (-) True G124591
TU156148 lncRNA downstream 823243 22597999 ~ 22598555 (-) True G124582
TU156091 lncRNA downstream 983069 22436886 ~ 22438729 (-) True G124535
TU156386 lncRNA upstream 184438 23655984 ~ 23663572 (-) True G124765
TU156401 lncRNA upstream 402132 23873678 ~ 23928150 (-) True G124779
TU156515 lncRNA upstream 939483 24411029 ~ 24411336 (-) True G124873
TU156550 lncRNA upstream 1104619 24576165 ~ 24577131 (-) True G124907
TU156640 lncRNA upstream 1476604 24948150 ~ 24948841 (-) False G124975
AMCG00002629 mRNA downstream 229142 23181931 ~ 23192656 (-) False AMCG00002629
AMCG00002625 mRNA downstream 384939 23033808 ~ 23036859 (-) True AMCG00002625
AMCG00002626 mRNA downstream 393451 23018946 ~ 23028347 (-) True AMCG00002626
AMCG00002627 mRNA downstream 409102 23000727 ~ 23012696 (-) True AMCG00002627
AMCG00002628 mRNA downstream 425278 22990253 ~ 22996520 (-) True AMCG00002628
AMCG00002633 mRNA upstream 206396 23677942 ~ 23682594 (-) True AMCG00002633
AMCG00002634 mRNA upstream 306143 23777689 ~ 23787869 (-) True AMCG00002634
AMCG00002638 mRNA upstream 568795 24040341 ~ 24045879 (-) True AMCG00002638
AMCG00002639 mRNA upstream 580073 24051619 ~ 24065028 (-) True AMCG00002639
AMCG00002640 mRNA upstream 669014 24140560 ~ 24183507 (-) True AMCG00002640
TU156342 other downstream 236630 23181921 ~ 23185168 (-) True AMCG00002629
TU156333 other downstream 268634 23085994 ~ 23153164 (-) True G124719
TU155250 other downstream 5432333 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 6582076 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 8475487 14941260 ~ 14946311 (-) True G123263
TU156457 other upstream 790019 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 820241 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 2832336 26303882 ~ 26305923 (-) False AMCG00002688
TU157116 other upstream 3383347 26854893 ~ 26875246 (-) True AMCG00002705

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00021472 False 2406 processed_transcript 0.53 17 NC_007127.7 43417632 ~ 43631241 (-)
grasscarp (Ctenopharyngodon idella) CI01000027_02895512_02924151.mRNA True 1306 mRNA 0.54 11 CI01000027 2895512 ~ 2924197 (+)