RNA id: AMCG00002633


Basic Information

Item Value
RNA id AMCG00002633
length 3904
RNA type mRNA
GC content 0.46
exon number 3
gene id AMCG00002633
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 23677942 ~ 23682594 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttttgtcttcGCTAGGTGGCCAACTGTGGTGTACGACTACTAAGAACATTGTGGAAGGCGAAGAGTTAGTGGCGTTTGCTGTAGATTTTGACTCCAGGCTCCAAGCTGTCAGCCACATGTCTCTGACTGAAGGAATGTACCCAGCACGCCTTTTGGACACTATACAGCTACTCCCTCAACAGGCTGCCATGGCATCAATCTTACCAACTGCCATTGTCAACAAAGACATCTTCCCTTGCAAGGCATGTGGGATCTGGTACAGGAGTGAGAGGAATTTGCAGGCCCATCTGATGTACTATTGCAGCGGCAGACAGAGGGAGCCGGAGACGGTGGTGGAGGAAAATGAGACCAGCCCCCATCAAACCCCCAGCATTTGCCCTTTCCCGCAGTGCAACAAGAGCTTCTCTGGGGCCCGGGCCCTTGAAATGCACCTAACGACCCACAACAGTGTCAAAATGGAAGAGACTCTCCCTCCTGGCACCAGCTTGAAATGCACAATCTGTAACTACACAGCAGATTCTCTTATTACATTCCAGCACCACATCCTCTCTCACCTGTCACAGGCTGCCTTCAGATGCAATCACTGCCATATCAGCTTCCAAAACCACAGGGAACTCTTGCAGCATCAGGAATTACACGGGCACAGCAGCAAACTTCACAGAGAGAGCGACAGTGAACACTCCCCCAGAGGCAACGAAGAAAACCTGCAGCAGGCGAGAGCCGAGCTGGGAAACAGGAAGGATGTCCTCCAGAGTCCCAAAAGCGCACAGAACAAGGACATGAACTCGGACGCAGAGCTGGAAAAGCCAGAGAAGAAGCCCACGCTGTCTAATCAGAAGGGAGAGACACACCTGGGTAATAAGGCCAGTTTTTCATATACAAGGATCAAGTCAGAGCCATCAAGCCCAAGACTGGCTTCATCTCCAGTGCAACCCAATATTGGGCCTACATTCCCCATGGGACCTTTTCTGTCCCAGTTTGCTTTCTCCCAGGACATTTCAGTGGTCCCTCAAGCTTCAGAGATACTTGCGAAAATGTCAGAGCTGGTCCATCGTAGGTTAAGACACGGAGGGAGTAGCTACCCTCCAGTGATCTATAGCCCCCTCATGCCAAAGGGGGCTACCTGTTTTGAATGCAATATCACCTTCAACAACTTGGACAACTACTTAGTCCATAAAAAGCACTACTGTAACAGCCGCTGGCAACACATGGCCAAGTCACCCGATTTCTCCAGCGTCTCAGAAAAGGTGACAGAAGCAGTAAGCCCAAACAGCGGCCATAGTTCGGTCAATATATTGAACGCCGTCTGCCATCCCTCAGATCCTGACAGCCATCTTATTCAATCTGCTTGTTTGAACTCGTCAGTGTTGGACATGATCAATTCCAGCGGCAAAGTGCCTGAGAAAGAACTTCCTGGACAAGTTAAGAAAGTTTCAACTCCTACTGGCAGCGATGAGAGGCTCAATGGGAAGCAAGCGGAGGTGAAGAGTCCAAGCACATCTGTAGTGGAAAATGAAAACGACCCTAACAAAACGACATGCGAAGCTTGCAATATCACATTCAGTCGTCACGAAACCTACGTGGTGCACAAACAGTATTACTGCGCGACTCGGCACGACCCGCCAATGAAGCGCATTTCAGCGAACAAAGTGCCTGCAATGCAGAGGACGATGCGCACGCGCAAGCGGAGGAAGATGTACGAAATGTGTCTCCCAGATCAAGATCAACGGCCTCAGCTGGGGCAGCCAGGCTTTCTGGGCGTTCCGTCTTTGGGCAGCCCCTGCACTTCTCAAGACGCCGCGGAGAATCTCGGGGATCGTTTCCATCCCAGGTGTGATGTGTTTCCGGGGATGGTTCCAAAACATCTAGAAGCTTCGCTCACTGTCACGAAAGCTGTCCTGGCACCTAAATGCAATACGCTAGATCACCAGGAACTTGATGCCCCCATAGATCTCAGTAAAAAATGCTCCCCTCATTCAGAAAAATCATGCAATTCTCCCAAAAGACTTTTGGACTATCACGAATGTACAGTGTGCAAAATCAGTTTTAACAAAGTGGAGAATTATCTAGCGCATAAACAGAACTTCTGCCCCGTTACAGCTCCCCAGCACAATGAGATCAGCAACCTGGACCAAACAATGTTCCCAGAAATTAAAATCGAGGGCAATAATCCCGACGACAGCTTTGACAAGAGCCCCGCAAAGTGCGATAAAAACGGGAGCGCCAAACTGATCGCACAAAACGGTAGCCTGTTCTCCTCCCATTTAGGGACCTTGCCCGGACTGAAAGCATTCAGTGAGAGTCAGCTGATTTCCACGAAAGAAGAGAACAAGAATTTGTTTCTGCCGCATTGCCTTTATCCTGGAGCAATAAAGAAAGTGAAGGGGGCGGAGCAAATATCGCCGTACTACGGGATAAAACCCACAGATTACATTGCCGGCAGTCTGGTCATGCAGGGCGAAACTAGCGAGCAGGATCAGAGCACAAATGGAGGAAGTGACACTGTCAAAGAGCAGCCAGCGCCCAATGGCTGTCCTCACCCGAACAAAGAACCTCTGCCACTGCTGCCTAAAAACAGGGGCATGGTAATAGTGAACGGAGGACATAAGCCAGAGGACAGGTCTGGCTCCGTTACCTTGCAGCAGGAAAACTTGCCCCACAACTCCCAGCAACCAGACAGTCACCCGTCCCCGACTTGGGTATCGGAAAACCCCGCTGACGCCAACGAAAACGTGTCGCCTTCCATAAAGTCGCCGCCAGAGGAAGCGCTGCCCACCATAACGAAAGGTGTAAACGGCTCTGCCCAAGCTGCCGGCAGCGGCAAATATTGCCGCCTGTGTGATATTCAGTTTAACAACCTGTCGAACTTTATTACACACAAGAAGTTTTACTGCTCCTCACATGCGGCAGAACATGTGAAATGaagttttgtctttctttttgtttgtttgtttgttttgggtttttttggtACACGGTTGTGTCTGGAATAGTGCATCATGCAGTTTTATATGCTGCTTGTGGACAATCAAGAGAAGCTTCTTCTTTCCTTACTTTAAGACTTAATGCAAATCATCGGTAAAAATCAAGTGTAATATTGGTGCCACTTTcacatacttttatttattttacaatcagTATTAATAGGAGTAGTgatcttaatttaaatgaaaataaatttataTCAGAGttgtttgtaatgttattgtataGTCATTCTTGTGTAGCACACATTGTTTACACTGTAATGTAGATTCAATGATACAATagacacagaaaacaggaaatgcattttagaCGAATAGCTACAAAAGCACTTGTGTATTTCTATCTTATTTGCTGttactgttttttgtatatGCGTAAATATAATTTGCGGCTATAATTCATGACTTCTTGCCTTAAACCACTGTTTTGGGGGATCACCAGGCACAATCCTGCATCTTATATTTCAGCATATACATTGGTCACTGGGCTTTGCATATGTATGTAGCTGTTTGTCCCCGTCTCTTTTCTTAAATTCAGAACTGTATGTTTTAATGAGGATGACAGCGTTCTTGTATAGtacttgtatttttgtttgctgatgcCCTTCGGTCTCCCTTTTTAAAACTTTGCTCTCAACGCAATACTTTCTAAAAGAACATTACTGAAAGCAGTATTACGAAAAGGGCGGTGCGTCAGATTTTCTTTGTATCCCATGAAAATGAAATTCTACAAGAATGAAGTTTATTGATGTTGCTAAACAAGATGGgggagtggggagggggggggacacTAATGTAACATGATCATTCCAATGTcctaataatgaaaaaagaaaaaaaaatcttaacaaCGTTGTTGCTATGCATGTATATGGATGGAATAAAATTCCAGAACTGTTGgaaattttaattttg

Function

GO: NA

KEGG:

id description
K17442 ZFPM2, FOG2; zinc finger protein ZFPM2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156386 lncRNA downstream 14370 23655984 ~ 23663572 (-) True G124765
TU156319 lncRNA downstream 381827 23138618 ~ 23296115 (-) False G124719
TU156251 lncRNA downstream 678834 22996819 ~ 22999108 (-) True G124669
TU156157 lncRNA downstream 1024223 22653482 ~ 22653719 (-) True G124591
TU156148 lncRNA downstream 1079387 22597999 ~ 22598555 (-) True G124582
TU156401 lncRNA upstream 191084 23873678 ~ 23928150 (-) True G124779
TU156515 lncRNA upstream 728435 24411029 ~ 24411336 (-) True G124873
TU156550 lncRNA upstream 893571 24576165 ~ 24577131 (-) True G124907
TU156640 lncRNA upstream 1265556 24948150 ~ 24948841 (-) False G124975
TU156641 lncRNA upstream 1265556 24948150 ~ 24950358 (-) True G124975
AMCG00002632 mRNA downstream 206396 23421798 ~ 23471546 (-) True AMCG00002632
AMCG00002629 mRNA downstream 485286 23181931 ~ 23192656 (-) False AMCG00002629
AMCG00002625 mRNA downstream 641083 23033808 ~ 23036859 (-) True AMCG00002625
AMCG00002626 mRNA downstream 649595 23018946 ~ 23028347 (-) True AMCG00002626
AMCG00002627 mRNA downstream 665246 23000727 ~ 23012696 (-) True AMCG00002627
AMCG00002634 mRNA upstream 95095 23777689 ~ 23787869 (-) True AMCG00002634
AMCG00002638 mRNA upstream 357747 24040341 ~ 24045879 (-) True AMCG00002638
AMCG00002639 mRNA upstream 369025 24051619 ~ 24065028 (-) True AMCG00002639
AMCG00002640 mRNA upstream 457966 24140560 ~ 24183507 (-) True AMCG00002640
AMCG00002641 mRNA upstream 513127 24195721 ~ 24211357 (-) True AMCG00002641
TU156342 other downstream 492774 23181921 ~ 23185168 (-) True AMCG00002629
TU156333 other downstream 524778 23085994 ~ 23153164 (-) True G124719
TU155250 other downstream 5688477 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 6838220 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 8731631 14941260 ~ 14946311 (-) True G123263
TU156457 other upstream 578971 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 609193 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 2621288 26303882 ~ 26305923 (-) False AMCG00002688
TU157116 other upstream 3172299 26854893 ~ 26875246 (-) True AMCG00002705

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00021477 False 4564 mRNA 0.47 8 NC_007127.7 43818897 ~ 44127326 (-)
grasscarp (Ctenopharyngodon idella) CI01000027_02611537_02740618.mRNA False 3390 mRNA 0.51 7 CI01000027 2611537 ~ 2740618 (+)