RNA id: AMCG00002636


Basic Information

Item Value
RNA id AMCG00002636
length 4768
RNA type mRNA
GC content 0.39
exon number 7
gene id AMCG00002636
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 24019504 ~ 24036531 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCAATACTCAAAAATGGCAGCCCTCAAAAAAACTGACGCCTTCtcatgaaatgtgtgttttagggAGCCAAGAAGATCCTTTCATTGGGCATCACAGGCCCCGAAGGGCACGAGCTGTGCCGCCCTGAAGAGGTCGAGGCGGAGGCCACCCAGCGAGCCATTACAATCGCCAGCTCTGTCAACTGCCCCCTCTATGTGGTCCACGTGATGAGCAAGTCGGCTGCTAAAGTGGTCTCCAGCGCCCGGAGAGCAGGAAGGGTGGTGTTCGGTGAGCCCATTGCTGCAGGGTTGGGTACAGATGGCTCTCACTACTGGAATAAGGACTGGGCTCATGCTGCTGGTTTTGTGATGGGACCCCCACTCAGGCCCGACCCCAGCACGCCAGGCTACCTGATGGACCTCCTAGCCAACGACGACCTCAGTGTAACTGGAACTGACAACTGCACCTTCTCCATCTGCCAGAAAGCCCTGGGAAAGGACGACTTCACCAAAATCCCAAATGGAGTGAATGGAGTGGAAGACCGCATGTCAGTCATATGGGAGAAAGGCGTGCATTCTGGAAAAATGGATGAAAATCGATTTGTAGCTGTCACCAGCAGCAATGCAGCGAAAATTTTTAACCTTTATCCCAAGAAGGGAAGAATTGCCAAAGGCTGTGATGCTGATATTGTTGTGTGGGACCCCAGTGCCACCAGGACAATTTCAGCAAAAACCCACCACCAGGCTGTGGACCACAACATCTTTGAAGGCATGTTGTGTCATGGAGTGCCTGTGGTGACAATCTCCCGGGGGAAGGTGGTCTGTGAGGATGGAGTCTTGCAGGTTGTTCCTGGGGAGGGGAGGTTCATTCCCCGCAGACCTTTTTCTGACTATGTATATAGACGCGTGAACCAAAGAGATCAGGTGGGGAAACCCAGCGCTGTGGAGAGGCAGCCTTATCAAGGAGAGGTTATTACAGTGTCTTCACAGAACGGGACTCCAAGGCATGCAGGAAGAGATTTGCACCAATCCACGTTCACACTTGCAGGTGACGCGGTGAGCAGTGGCTCCAGCCTCCCCCATCCATCGAAGCGCGTGTTGGCCCCTCCTGGTGGGAAGTCCAGCATTGTTTTCTGAATGACTAGGGAACCAGGTCATAGCTGAAAATCACACAAATAGTGATGTTTTTAAGATTTGCGTAATATGATCTGTAAGATGAGCCATTGTTAATTAGCTGGAATTTAGATTCAACTAATTTCATAAGCTTAAttctttattgaaatattgtattatgtttaggTAATAATCCATACAAAGTTGCCAAAGATAACTGTACAGTGTAGTCTGTACACAAATCTGTGCAGGGATCGCACAAAAGCAGTCATTAACAGCATTCATCAGTGTGCCTGCCTATGAAGCAAAACTGATAAATGAGAggataaatgaaaatgtataactgtGAAAATAGATATCAGAtcccatattaaaaatatgtctgtgaaactaTCAGATCTATTGTACAACTTGTTTTTTGCTCAAGAGCTGTCTGTTACATCCGGATTTCCAAGCCTTCTGTGACTAGTCAGTATTGCAAAAATGTACAGGGATTACAAAACTGCTCTATAGCCCCCAAAAGTGAGCCTTATTTGGTTTAGTAGACCTGCACTGGTGATAAAAGAAGAACTGTATGGTTCACTTTGGAAAATACAGACTGGTGGTATGATATTGTCATGCTTCAGGGAGGAATTTAATCACAGCACTAAAAATAGGAATCTGTCATCAAAATGAATGTTTGAGGGAAGTAGGAGAACAAAAGTGTTgtaataatttgatttgttaatgtttttattatcatctcTTCATTATATTGAGGACTATTAGAGTTACCTGAGTCATTAGAACACCATGACGAGGCAGTCTGAAACCACTCTGAATCTACCTTTAAAGGCAGTTATGGGGCCAGCAGTAGTTTGCAATGTATATACCACTAGCGGAATCATgtgcaggcagagagagagagtgtgtgagtgtagtCTGTCAAACAATAGTCtttataaaataacaacacTCAACATATGGCATTTTAGTGCTATACATTTGAAACAGGAGCTGACAGTGTGCGGTTAGTTCATgagatgttttttctctttgcGTGAGGATAATAATAAAAGTCGATGGATGGCAAATGACAGATAAACATGAAGTCCCCAAAGTGTCAAGGAGAAATCTGGTGCTGAATCTTAAAAGTAAAACATCTACTAAGGTATAAAGGAACCAGACAAACCAGCAGAATGATGGTATAGTTATATTCATATACCATCTGTacttcattttaaagttttattaagCAGCTTAGGGTATATGCTCAGGTGAAGTAATGTCTCAAGTATTTTGTGATGGCCTTtggtttaattcaaatattcaacTAAATAGCACAAACCGTTCTGTATAGGTTAAAGTAGTATTATtctatatattaatacaaatttgatAAGCAAATGGAACACAGCATTGTGTCTATTATTCTGTGAtgcttgtgttgttgttgattcCGAAAACAGGAACAGATTTTGCTATTTCTGGATTGCATCAGAGTTCAGGAAAACAACCGAAAACCCAGTCATTTGTTCCCTACAAAGGATGTTGAAGTGGGATTTTGGCCCCTAAGCCCTTTCAGATTTAATGTAAGTTAATCAACATGTTATGGGTCAACAGAAGACTCCTGAGTCACAGTCAACCCACTCATCTCCACACAATGTGGatgaacatgtattttatttacggATCTCTGTTGAACACTCACTGTCAGTTGGAAAAGTGAAACAGTGCCTCAAATTAACCCTTaggaataacaacaaaaaatacctGCAAAGGCAAACTATTAAACACACGACTGATCCACCACTAGAAATCAGTCTTAGATCTGTGATAAATATGTCCTTTTTACATATGccatgcatgtattttatagggaggtatattttgtaattgtattcccaaaaacaatgtttacagAGTTGTCATTGTACTGGtggctgaaatgtatttgaaatatattgttacTATGGTGACTTCCGTCATCTGGCCTGTTGTGTTCAAAGCCCATGCAGTACATCTTGCCTATGAGATTAAATCACTCAATAACTCAATCAGTCTTTATTTGATGCAGCCCCCTCAATATATTGTTTGCAAGATGCTTCACAACTACCCCAAAACAATACCTTTATGATAAGTAtagaacaacaataaaaaagtaatcATACCTGaataactaataatacaaatatttaatatagcaTGAATGCACATGCAATATAAAACAaggtaaacattttattaatatgtcaAACATCAAAACTTGAAgattaattgatatattttggGATGTGgtttcaatattttcaaatgttctctTTGAATAAAGAAACTGTTTCCCTCTTCGTTTCTCTGTGCAAAAAGTGCAATTTGAAAGTCACTGTAAACCTACATAAACCTAATCCTCTTCTGAATGTAGGCCTTGTTATGTTCTGAACAAAGCTAATTAATTAACAGCCCAAACTCAATACAATGGTCAATTCATTGCTTATGTTTGTGTCATTAGTGTAATAACCTTTTGCTGAGTGGTGTTGTAGTTCATATTTCACAGAAGTGGTTTACTCTTCACCTCAGAGTATGTGCTGTTTTAATTTCCCCCAATTACTAATGGCTTCACTTACTTGTCACATAGAagttatgtattcattttattattattattattattattagtagtagtagtagtagtagtagtagtagtagtagtagtagtagtagtagtagtagtagtagtagaagtagtaattaatgaatgtatttatgcacATTGCTTCAGTAGTCTTCAAAGAGAGGTTTATCATAGTTGCCAGAGCAATGTATTGTATATGAAAACTCAGAGGGTCAAACTAGGCCATGACTAAACACAATCATCCTCACAGCCCAAGGCACTTTGCTACTgtcagtatgtatgtattccacTTCTGTTTTCAAAGTATCCTGCgtcttatttttcaaattatataagATGTCATGTTGTAATTTGTTCCTCTTTCCAAGATCTACATCCTTTCAAACTACCAAGAACAAGAGAGATTTATATTAAACCATCTTTGTCATTTTCCTCTAAAGTGTCCGGAAGATCAGTTCATGCagattgtattgtttatgtcTTCCATAATTTCCATATTAAACAAGCAATAATTGAACAATTGCAGACAAATTAACACTGTCTGTAAGAAGCTCATAATGACCTCGCATTTCCTTCTGtcagcataaaaaaaatacaaatacttagaattttatttttgtcaacaCAGTAAATCTGCAAATGTGTCACAGCAGAACAAAAATGATAAGCGGCGCTCTGTGGGGGAGTTTGACATTTTCTAATGGCCCTATCTCATACAGCCTTGACAAAGTGTAATTTCATTACCTGATTTGACTGCTGCTCTGCATAGCATTACTGTACTTATTGAAAAATGATGCTATCTGAAATGCACACTGCTCCTCTTGCAATAGctgtataaattaaaattgatcTCATTTACTGTACCTATTCCTGTATGCTTCCTTATTACAGATGGCTTCTGTTCTGCTTGAGAAATATCCCTTGTGCAGCAGATAGATACTTATCCAAGTGTTAAAGTGCCTGCATTgcgtttttttctctctctctctaagtgAATGTGTTTTACGCAAGTGTATGCAGACTTGAATAACCGTGTAAAATTAAACCTCAAGATTGCTTTACAA

Function

GO:

id name namespace
GO:0006208 pyrimidine nucleobase catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156405 lncRNA upstream 15143 23987702 ~ 24004361 (+) True G124783
TU156396 lncRNA upstream 189520 23829670 ~ 23829984 (+) True G124774
TU156392 lncRNA upstream 337278 23682013 ~ 23682226 (+) True G124770
TU156369 lncRNA upstream 412665 23606537 ~ 23606839 (+) True G124750
TU156357 lncRNA upstream 583184 23421973 ~ 23436320 (+) True G124740
TU156445 lncRNA downstream 225017 24261548 ~ 24261841 (+) True G124823
TU156459 lncRNA downstream 241903 24278434 ~ 24278640 (+) True G124831
TU156488 lncRNA downstream 351378 24387909 ~ 24392351 (+) True G124856
TU156490 lncRNA downstream 351378 24387909 ~ 24392351 (+) False G124856
TU156495 lncRNA downstream 367945 24404476 ~ 24406978 (+) True G124860
AMCG00002637 mRNA upstream 11793 23997247 ~ 24007711 (+) True AMCG00002637
AMCG00002635 mRNA upstream 34118 23967578 ~ 23985386 (+) True AMCG00002635
AMCG00002631 mRNA upstream 342067 23652972 ~ 23677437 (+) True AMCG00002631
AMCG00002630 mRNA upstream 611538 23407566 ~ 23407966 (+) True AMCG00002630
AMCG00002623 mRNA upstream 945806 23068633 ~ 23073698 (+) False AMCG00002623
AMCG00002642 mRNA downstream 333353 24369884 ~ 24376014 (+) True AMCG00002642
AMCG00002646 mRNA downstream 469762 24506293 ~ 24517840 (+) True AMCG00002646
AMCG00002649 mRNA downstream 640775 24677306 ~ 24679989 (+) True AMCG00002649
AMCG00002650 mRNA downstream 725353 24761884 ~ 24775578 (+) False AMCG00002650
AMCG00002657 mRNA downstream 902335 24938866 ~ 24949499 (+) True AMCG00002657
TU156391 other upstream 338119 23677935 ~ 23681385 (+) True G124769
TU156281 other upstream 728969 23152648 ~ 23290535 (+) True G124689
TU156269 other upstream 839461 23068124 ~ 23180043 (+) True AMCG00002623
TU155679 other upstream 3743249 20274089 ~ 20276255 (+) True AMCG00002573
TU155541 other upstream 4887146 19130403 ~ 19132358 (+) False AMCG00002561
TU156498 other downstream 385721 24422252 ~ 24422613 (+) True G124863
TU156924 other downstream 2239060 26275591 ~ 26278973 (+) False AMCG00002684
TU156956 other downstream 2325681 26362212 ~ 26369525 (+) True G125219

Expression Profile