RNA id: AMCG00002637


Basic Information

Item Value
RNA id AMCG00002637
length 591
RNA type mRNA
GC content 0.49
exon number 3
gene id AMCG00002637
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 23997247 ~ 24007711 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAAGTCAAAGCAGGATTCTGATAAAAGGAGGAAGAGTGGTGAATGAGGACTGCTCCGAGATCTGCGACGTCTACATTGAAGATGGCATCATCAAGGAGACTGGGTTAAACCTGCAAGTACCAGGGGGAGTGAAAGTGATTGATGCCACGGACAAATTGGTAATGCCTGGCGGGATCGATACGCACACTCACATGGAGCTGGCCTTCATGGGCACCAAAACAGTGGACGATTTCTACACTGGAACTAAGGCTGCTGTGGCTGGAGGAACCACAATGATCCTAGACTTCGTCATCCCTCCGAAGGGTACCTCCCTGCTGGAAGCCTATGAGAAGTGGAGGAGTACAGCAGATCCCAAAGTCTGTTGTGACTACTCCCTTCATGTTGCCGTCACATGGTGGAGTGATCAGGTTAAAAGGGACATGGAGACACTGGCCCAACAAAAAGGAGTCAACTCGTTCAAAATGTTTATGGCCTATAAAGATGTCTTCATGCTGCACGACGATGAGCTGTATGCTGTCTTTTCACAATGCAAAGAAATTGGAGCCATAGCGCAGGTTCACGCAGAGAATGGAGATTTGATAGCAGAG

Function

GO:

id name namespace
GO:0006208 pyrimidine nucleobase catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156396 lncRNA upstream 167263 23829670 ~ 23829984 (+) True G124774
TU156392 lncRNA upstream 315021 23682013 ~ 23682226 (+) True G124770
TU156369 lncRNA upstream 390408 23606537 ~ 23606839 (+) True G124750
TU156357 lncRNA upstream 560927 23421973 ~ 23436320 (+) True G124740
TU156273 lncRNA upstream 720472 23218330 ~ 23276775 (+) True G124687
TU156445 lncRNA downstream 253837 24261548 ~ 24261841 (+) True G124823
TU156459 lncRNA downstream 270723 24278434 ~ 24278640 (+) True G124831
TU156488 lncRNA downstream 380198 24387909 ~ 24392351 (+) True G124856
TU156490 lncRNA downstream 380198 24387909 ~ 24392351 (+) False G124856
TU156495 lncRNA downstream 396765 24404476 ~ 24406978 (+) True G124860
AMCG00002635 mRNA upstream 11861 23967578 ~ 23985386 (+) True AMCG00002635
AMCG00002631 mRNA upstream 319810 23652972 ~ 23677437 (+) True AMCG00002631
AMCG00002630 mRNA upstream 589281 23407566 ~ 23407966 (+) True AMCG00002630
AMCG00002623 mRNA upstream 923549 23068633 ~ 23073698 (+) False AMCG00002623
AMCG00002620 mRNA upstream 929447 23056782 ~ 23067800 (+) True AMCG00002620
AMCG00002636 mRNA downstream 11793 24019504 ~ 24036531 (+) True AMCG00002636
AMCG00002642 mRNA downstream 362173 24369884 ~ 24376014 (+) True AMCG00002642
AMCG00002646 mRNA downstream 498582 24506293 ~ 24517840 (+) True AMCG00002646
AMCG00002649 mRNA downstream 669595 24677306 ~ 24679989 (+) True AMCG00002649
AMCG00002650 mRNA downstream 754173 24761884 ~ 24775578 (+) False AMCG00002650
TU156391 other upstream 315862 23677935 ~ 23681385 (+) True G124769
TU156281 other upstream 706712 23152648 ~ 23290535 (+) True G124689
TU156269 other upstream 817204 23068124 ~ 23180043 (+) True AMCG00002623
TU155679 other upstream 3720992 20274089 ~ 20276255 (+) True AMCG00002573
TU155541 other upstream 4864889 19130403 ~ 19132358 (+) False AMCG00002561
TU156498 other downstream 414541 24422252 ~ 24422613 (+) True G124863
TU156924 other downstream 2267880 26275591 ~ 26278973 (+) False AMCG00002684
TU156956 other downstream 2354501 26362212 ~ 26369525 (+) True G125219

Expression Profile