RNA id: AMCG00002639


Basic Information

Item Value
RNA id AMCG00002639
length 3592
RNA type mRNA
GC content 0.40
exon number 7
gene id AMCG00002639
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 24051619 ~ 24065028 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTGTTAAACAGCCTTTTTAGTGCACTGCTGCGATATGTGTCATCAGGACAGGGTGATCTCAGTTGCTACACCTGCCCTGTAAGCTCATCCGAACCATTCCAACTTGCTATCACTCATTCACACCTGAGTGCTGTCAGCCAGTGCCCCGTGGAAGATTCCCGCAGCCCCCCGTGCCTGCTAGCCGCAAAGACGCCCCGTATTCTGTTCCGAGCGAAAGGAGGGTCAGCTGAAATGGGCAGGCAGGGACAAGATGCCACCTCCGCCAACCCTGGCATGCGCATGCAGCGGTCGCCCAGTCGGATGAGTCTCTCGGCATCCTTCGAGGCTCTGGCTGTGTATTTCCCTTGCATGAACTCCTTTGATGAGGAGGACGGAGAAGCTGGAGGGAAGAAGCTGCGCAGCACCATTCAGAGGAGTACAGAGACAGGCCTGGCAGTCGAGATGAGAAGCAGGATGACTCGGCAAGCCAGTCGAGAATCGACTGATGGCAGCATGAACAGCTACAGCTCCGAGGGAAACCTCATCTTCCCAGGAGTGCGGCTCGCCTCTGACAGTCAATTCAGCGATTTCCTGGATGGCTTGGGACCCGCTCAGCTCGTTGGGCGACAGACCTTGGCCACCCCTTCCATGGGTGACATTCAGATTGGAATGATGGACAAGAAAGGACAGCTAGAGGTGGAAGTCATCCGAGCTCGTGGCCTTGTGGGAAAAACAGGTTCTAAGGCACTGCCAGCACCCTATGTTAAGGTGTACTTGTTGGACAATGGAGTCTGCATAGCCAAAAAGAAGACTAAAGTAGCAAGGAAAACTTTGGATCCCCTCTACCAGCAGCAACTATCGTTTGAGGAAAGTCCAGCGGGAAAAGTCCTACAGATTATTGTATGGGGCGACTATGGACGCATGGACCATAAATCCTTTATGGGAGCTGCTCAGATACTTTTAGATGAGCTTGACTTGTCCAACATGGTAATTGGGTGGTTCAAGCTCTTTCCCCCTTCCTCATTGGTGGACCCAACCTTGGCACCTTTGACTAGAAGAGCTTCCCAGTCATCACTTGACAGTTCTTCTGGACCTTATGCACGTTCATAGCAGTGCAAGGAAGATAGCGTTGTTGTAGCAACCAGCGTTCGAGTTAACAGTCTTAACAGGTCACACGCCCTGGTCACACTGCATGCTTAATGTTGTGTCTTCTGAGCCCGTTTCTAGGGATGCAAAGTGGTCCTGTTTTCTGCGAATGTCGCACACATTGTGCGCTGAGAAAGCCCTCTGGGGAGAAACAGGTGAAAGTTTGTCAAGAACTTACATGCGTGGAATTCAGCGACACTAGGTTTTCATCAAGATTGAAGccatggaaaaaaactaaaacaaactgaGAACCCATCGATGAATTCAACTGAAGcccttttttaaagaaatgtcatttttttgttgttgttgttgcacccAGTTGGGTCACAATTCTCCTAACAAGAAGCTTGGTTACGCCATGCCAATCAACCCAGCTGACATGGAGCCGTGAGGACAATTAAAAGCGGCAAGGGATGTCTTTAACATTATGAAAGTGGAAGAGCACCAGATAAGCCTCCTGCCCTTTCCCTCTGTTCCCCAGGAAATGCACATGTGCTCAGAGTTAACACAGTTCTCGAAAGACAATTttcagaaaaattaaaaaattaaacaatggcAATACAGATGTGGCTACCATCGACGCTCCAGAATATTTACACCAGAACCAACAATGAGATGAACTTTTGTGatctaatataataatttctCTGTTGATATATTGTATgaaatttaaaaggaaaaaacttttttttgcatGGACACAAATTTAGctgaactaaaaaataaaatcataaaaaaaaaactattaaaaattattttcttgAGGCTGCAActtgcaaaaaaagaaaaaaaaacagatcagccattttcaacaatttatattatttttaaaaataaatttcactAATGCATGGTTTTCAAGGGGAGTGAATGCAACAGCGTGATTAAAAAGACACCATGTTTACCATCCTTTAGACCATTCATTAGTCTGTATTTTTACGGACGTTCAGTTAAGGAAAGCTAAAAAGATTACTTTCtagcaaatatttaaaaaaaagacctgTTTATGTGACAAAgagatgattaaaataaatgtaaattatttatttcattgtaaagGCGCAAGCCTTATAAAGATAAACATTATGTGCAAATTGTAcactttttctcttttactCCCTCTTCCCAGGGTGACCATTGTACTATCCATTGCTACCTTTGTCTAATTCCCCTCTTATGTCCCATTTGTTGCAGAACTGTAGATTATTCTACAATTCTGTATtgtttaagtatatatatttttttattttacttgtttaaCAAGCATGTTGAAAAGGGTTTTTTGCAACATGGCTTGGGCACACCTTACAGTAACTCAGCATGTTTTGATAAAGAAGATATTTGGAATTTTTGCAGTTTCTTGTACAGTGCATGTAAACTAAGTTACTTTTCTCCCTCACCTTAAATTGAATTCTACAGCAAATTAGTGATTGGGCTTTCATGGCCaaacttaaaatgtttgatGAAACATTCCACCTCCCAgcatcatgttttatttctgaaaaaaggcattttatatataaaggagGTTGAATAGCAAAATATTTAAGGTTgcaagtatattttattttaatattgttataaagaaaagtaatacaAGCAAAAAATATTCCCATACACTGGCACTGCAAGAGGCATTCTTCACAAGAAAGTAGCAGCAAAGGTTACCTCTGTAACGATCTTGCTGTAAAGTTCAATTTTACAGGCACTATCTGTGAAGCTATGAATGACTCACACAGtacatggaaatggaaaattgcCACACAAGATGAATTTTtagttgtttcttgttttgacaaaataaaagtaatttactatatttttgttagtttatttacaTGCTAAGGCCAACTACCAAATAATTCCCACAAAGGTGGTGGTGTTCATTTGAATGGTTATCCAAACTATTTTAGTCAAGTGAAATGTGAGAcatcatttctctttttttacagttaaaGGATATTTCTTCTCAAATAAACACAGTTCAAATTTGTTTCTGTAACAAGCAATATATTCCAGACTGGATGTCCCAAGTACATACAGCCAGCTTACAATTCAAAGAACTTGAATTTCAAAGCAGAAAAGTCATTTTGAGGAAGGAATGATGTATCTGAAGACCGAGACAGGTGTTATTTATGTTTGGAATGCCTTTAACTTATCTGGTGCAATGTGTTCATCCCAAGACTCTGTCTTGGTAAAAGTGTGGTTGAGTACAGAGATTTATGtcagttatttttcaaataaaaaaagaaagttacaCAGACACTGAAGTACCAGCAAACCAATACAAACCATACTATAGCATTTACccttagttatttttaaattatctgaACTACTACTGTGAGTTAAACAATAGTTACTTTACACACAGTTGATCTTTTgtgcatatttttcatataatatatatgtgtgtatatgtatatgaatatatataaatatacctatatacacacacaca

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K15297 RIMS2, RIM2; regulating synaptic membrane exocytosis protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156401 lncRNA downstream 123469 23873678 ~ 23928150 (-) True G124779
TU156386 lncRNA downstream 388047 23655984 ~ 23663572 (-) True G124765
TU156319 lncRNA downstream 755504 23138618 ~ 23296115 (-) False G124719
TU156251 lncRNA downstream 1052511 22996819 ~ 22999108 (-) True G124669
TU156157 lncRNA downstream 1397900 22653482 ~ 22653719 (-) True G124591
TU156515 lncRNA upstream 346001 24411029 ~ 24411336 (-) True G124873
TU156550 lncRNA upstream 511137 24576165 ~ 24577131 (-) True G124907
TU156640 lncRNA upstream 883122 24948150 ~ 24948841 (-) False G124975
TU156641 lncRNA upstream 883122 24948150 ~ 24950358 (-) True G124975
TU156720 lncRNA upstream 1309852 25374880 ~ 25433728 (-) True G125036
AMCG00002638 mRNA downstream 5740 24040341 ~ 24045879 (-) True AMCG00002638
AMCG00002634 mRNA downstream 263750 23777689 ~ 23787869 (-) True AMCG00002634
AMCG00002633 mRNA downstream 369025 23677942 ~ 23682594 (-) True AMCG00002633
AMCG00002632 mRNA downstream 580073 23421798 ~ 23471546 (-) True AMCG00002632
AMCG00002629 mRNA downstream 858963 23181931 ~ 23192656 (-) False AMCG00002629
AMCG00002640 mRNA upstream 75532 24140560 ~ 24183507 (-) True AMCG00002640
AMCG00002641 mRNA upstream 130693 24195721 ~ 24211357 (-) True AMCG00002641
AMCG00002644 mRNA upstream 283852 24348880 ~ 24369782 (-) True AMCG00002644
AMCG00002643 mRNA upstream 312703 24377731 ~ 24386755 (-) True AMCG00002643
AMCG00002645 mRNA upstream 323106 24388134 ~ 24406980 (-) True AMCG00002645
TU156342 other downstream 866451 23181921 ~ 23185168 (-) True AMCG00002629
TU156333 other downstream 898455 23085994 ~ 23153164 (-) True G124719
TU155250 other downstream 6062154 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 7211897 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 9105308 14941260 ~ 14946311 (-) True G123263
TU156457 other upstream 196537 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 226759 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 2238854 26303882 ~ 26305923 (-) False AMCG00002688
TU157116 other upstream 2789865 26854893 ~ 26875246 (-) True AMCG00002705

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00027838 False 3164 mRNA 0.53 26 NC_007130.7 13099544 ~ 13186822 (+)
grasscarp (Ctenopharyngodon idella) CI01000320_00915850_00922116.mRNA True 3776 mRNA 0.41 6 CI01000320 913093 ~ 922286 (+)
tiger barb (Puntius tetrazona) TU169067 True 2551 lncRNA 0.38 2 NC_056714.1 19640914 ~ 19643490 (-)