RNA id: AMCG00002644


Basic Information

Item Value
RNA id AMCG00002644
length 1754
RNA type mRNA
GC content 0.49
exon number 10
gene id AMCG00002644
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 24348880 ~ 24369782 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCCGGTGGCTTCACCCAGGTCACGTGACGATAACAGATGACCCATGACCTTTTCTGGGAACACGTGTGCAAGATGGAGTAACGCACGTTTGGTTCCTTTTgtatatttctattaaatatacaACCCATTTAATCATAATTTCCCAGCGTACTTGTAAAATGAAGGTGAAGGTATTGAGCAGAAACCCGGATGATTATATCCGTGAAACGAAGAAGGATATTCAGCGAGTTCCCAGGAACTATGACCCAACCTTGCACCCCTTTGAGGTGCCAAGAGAGTACACCCGAGCCCTCAATGCCACCAAACTGGAGCGGGTGTTTGCTAAGCCATTCCTGGCCTCTCTGGATGGGCACAAGGACAGTCTGAGCTGCATGGTCAAACACCCCACCAGTCTGTCCACACTGCTTTCAGGAGCCTGTGATGGGGAGGTCAAAATCTGGAACTTGACCAAACGGGAGTGTGTGCGTTCAGTACAGGCACACGAAGGGTTCGTGCGAGGGATGTGTGCCAGATTCTGCGGCACTTCTTTCTTCACGATTGGAGATGACAAAACCATCAAACAATGGAATATGGAGGGACCTGCATATGGTGAGGAAGAAGAGCCACTGAACACAATACTCGGAAAGGTAGTGTACACAGGAATTGACCACCATTGGAAAGAAGGCACCTTTGCCACATGTGGGCAGCAGGTGGACATCTGGAACGAACAGAGGACCAGCCCCATACGCACCTTCACTTGGGGCGTGGACAGCATCAACAGTGTCCGCTTCAATCCTGTGGAGATCGTAATGAGTTTGCGAAGCAACAGCTTGTGCTGGAATCCAATGGAAGCTTTTATGTTCACTTGTGCAAACGAAGACTACAACTTGTACACGTTCGATATGCGTCGCCTGGACTCTCCTGTGATCGTGCACATGGACCACGTGTCTGCAGTTCTGGACGTTGACTACTCCCCAACCGGGAAAGAGTTTGTGTCAGCCAGTTTTGATAAATGCATCCGTATCTTCCCTGCAAACAAGGGACACAGCAGAGAGGTCTACCATACTAAACGGATGCAGCACGTCATCTGTGTGAAGTGGTCCGCTGATAATAAGTACATTCTGAGTGGGTCTGACGAGATGAACATCCGCTTGTGGAAGGCAAACGCATCGGAAAAACTTGGAGTGCTGGCTCCACGGGAGAAGGCTGCGCTGAACTACAGCCAGAAACTGAAGGAGAAGTTTCAGCATCACCCTCAGATCAAGCGCATCGCCCGCCATCGCCACCTGCCCAAGACCGTCTTCAGCCAAGCCAAGGAGCTGCGTGTCATGAAGGAAGCTCGCCGCAGAAAgGAAACTAATGTTCGCAAGCACAGCAAGCCTGACTCCGTTCCTATTGTACCAGAGAAAAAGAAGCATGTTGTGGCTGTTGTGGAATAATTGTGGATGGATTGACGTGCCGAAATGGTGCCTGGCTCTGTGCATTGCTACCAAGGACTGATCAATTCCGTCTATGTGCTCAAAAGACTCAACCCCAAATTCAACCCCTGTCAATCTTACAGGATATAGTTGAAAGTATTTACTTTTGTTAATAACTTGTTCAGATTTTGTGAACtttgataaaataaagtgatgTCCATATCCAGTATTTATATGTGGTcttattgaaatgtttgaaagtTGTCTTCTGCCTTAGGTCTTACACTTCCTTTACAGGGGTGGTTCTACAGGTGTGGCCCAGGGTAGCTATGGCCACCCCTGGAAAGTGCGTGGC

Function

GO: NA

KEGG:

id description
K11806 DCAF13, WDSOF1; DDB1- and CUL4-associated factor 13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156401 lncRNA downstream 420730 23873678 ~ 23928150 (-) True G124779
TU156386 lncRNA downstream 685308 23655984 ~ 23663572 (-) True G124765
TU156319 lncRNA downstream 1052765 23138618 ~ 23296115 (-) False G124719
TU156251 lncRNA downstream 1349772 22996819 ~ 22999108 (-) True G124669
TU156157 lncRNA downstream 1695161 22653482 ~ 22653719 (-) True G124591
TU156515 lncRNA upstream 41247 24411029 ~ 24411336 (-) True G124873
TU156550 lncRNA upstream 206383 24576165 ~ 24577131 (-) True G124907
TU156640 lncRNA upstream 578368 24948150 ~ 24948841 (-) False G124975
TU156641 lncRNA upstream 578368 24948150 ~ 24950358 (-) True G124975
TU156720 lncRNA upstream 1005098 25374880 ~ 25433728 (-) True G125036
AMCG00002641 mRNA downstream 137523 24195721 ~ 24211357 (-) True AMCG00002641
AMCG00002640 mRNA downstream 165373 24140560 ~ 24183507 (-) True AMCG00002640
AMCG00002639 mRNA downstream 283852 24051619 ~ 24065028 (-) True AMCG00002639
AMCG00002638 mRNA downstream 303001 24040341 ~ 24045879 (-) True AMCG00002638
AMCG00002634 mRNA downstream 561011 23777689 ~ 23787869 (-) True AMCG00002634
AMCG00002643 mRNA upstream 7949 24377731 ~ 24386755 (-) True AMCG00002643
AMCG00002645 mRNA upstream 18352 24388134 ~ 24406980 (-) True AMCG00002645
AMCG00002647 mRNA upstream 316791 24686573 ~ 24687842 (-) True AMCG00002647
AMCG00002648 mRNA upstream 380427 24750209 ~ 24760885 (-) True AMCG00002648
AMCG00002651 mRNA upstream 406483 24776265 ~ 24786604 (-) True AMCG00002651
TU156479 other downstream 9314 24291787 ~ 24339566 (-) True G124848
TU156457 other downstream 87057 24261565 ~ 24261823 (-) True G124829
TU156342 other downstream 1163712 23181921 ~ 23185168 (-) True AMCG00002629
TU156333 other downstream 1195716 23085994 ~ 23153164 (-) True G124719
TU155250 other downstream 6359415 17922452 ~ 17989465 (-) True G123829
TU156949 other upstream 1934100 26303882 ~ 26305923 (-) False AMCG00002688
TU157116 other upstream 2485111 26854893 ~ 26875246 (-) True AMCG00002705

Expression Profile