RNA id: AMCG00002648


Basic Information

Item Value
RNA id AMCG00002648
length 1785
RNA type mRNA
GC content 0.43
exon number 11
gene id AMCG00002648
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 24750209 ~ 24760885 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtttaaattgtcaCAGTTGGCCTGTCCGTTTCGATTATTAAGTATGggtttataaaatgtgtatttgaatgcattgtatttatGACTGGATTTAGACAGACGATGTGTTGTTTAGTCGTAGAAGACTCTTGATGTAATGCACTTAAATCCCTAGGAAGTTGGATTTCAATTGTGCTGCGATGCTGCAGCACTGCATAAGAAGCAATAGCAAAGGTTTGGATTGAGCCATCTAGACAACCGTGTAagaaacatttactttaaaaggAAATGCTACACCTTTCTTTCACCCAAGATTGAGAATGGAAAGATTGGCTAAGAACGAAGAATGCTGTCTCGATGCAGACTTGTCCAAGTCGGTACACGACACAGAGGATGGCGTGGAAGGAGATGGTAATGGACTTCCCTCCTTTAAAGACTCGATCAGCACTGAGAAACAGGAGAAGGCCATGGTGAGCCTGACGTCCCCAGTTAAGAGGAAACTGGAGACAGAAGATGATCATCCAGCCAAGAGAGCGcACTCTGAGCAGGGCCATGGTCAGATGGTAGCTGTGCATTATAATACACTGCAGGAAGTTGGCTTAGCAGCTCGCAGCCAGAGCAGGATCTTTTACCTCCGCAACTTCAACAACTGGCTCAAGAGCGTTCTTATTGGTGAAATGCTGAACAAAGTAAGGCAAAGCCAAAGGGAGGTGTGTGTGCTCGATTTGGGCTGTGGGAAAGGAGGTGATTTGCTGAAGTGGAAAAAAGGCAGAATCAGTAAAATTGTGTGTGCAGATATAGCGTCAGTGTCAGTAGAGCAGTGTAAACAGCGCTATAGTGACATAAGGAAAAGAGGTCGCCCCAACGACCGCATCTTCTCTGCAGAGTTTGTCACAGCTGATTGCACAAAGGAGGTCCTGGCGGAAAAACTGAAAGACCCTAAGATGACCTTTGACATCTGTAGCTGTCAGTTTGTCTATCACTATTCCTTTGAGACACGAGAGCAGGCAGATATGATGCTTAGAAATGCCTGTGAGAGACTGAGACCCGGGGGTTACTTCATTGGTACCACGCCCAATGCCTATGAACTGATAAAGCGACTTGAAGCATCCGAGACGAATTGCTTTGGAAACGACATCTACAAAGTCACGTTTCAGAAGAAAGGAGACTACCCCCTCTTCGGCTGTCAGTACGATTTCAACCTGGAGGGAGTTGTCAACATTCCTGAGTTCCTTGTATACTTCCCGTTGTTTGAGGAGATGGCAAAGAAGTACAACATGCGACTGGTTTTTAAAAAGACTTTCTACGAGTTCTTTCAAGAGAAGATTCAGGATGAGGAgcataaaatgttaatgaagaGGATGCAGGCATTAGAACCATACCCAGCAGATGACAGAAATAAATTGGTGTCGGACAGTCCAGAAGAATATGAACATGCTGAAAAGTTCAGAAAATCTCATGATGTAAAACTACCTTTGGGAACATTAAGCAAATCGGAGTGGGATGCGACAAGCATATACCTGGTATTTGCATTTGAGAAAATGTCTTGAACTTCCTGAGGGAAAACTCTCACCTATCACAGAAACCTGCATGTGGTTAAGAAACGGATTACAGGATAATTGCCTACTTACTTTGTGCtttctgttcagttttttgtttttgtttacctAGTCCAAGAGACTCATGAATTGACATTTGTGTCTGGAGAGCAGGACAATTTATTCAATCTAGATGGACAATGTCTCGAAGCATTTTACTGTaactgatgatttttttttttttttaattaaatttcttTTCCAagaa

Function

GO:

id name namespace
GO:0006370 7-methylguanosine mRNA capping biological_process
GO:0080009 mRNA methylation biological_process
GO:0036265 RNA (guanine-N7)-methylation biological_process
GO:0005845 mRNA cap binding complex cellular_component
GO:0005634 nucleus cellular_component
GO:0004482 mRNA (guanine-N7-)-methyltransferase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K00565 RNMT; mRNA (guanine-N7-)-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156550 lncRNA downstream 173078 24576165 ~ 24577131 (-) True G124907
TU156515 lncRNA downstream 338873 24411029 ~ 24411336 (-) True G124873
TU156401 lncRNA downstream 822059 23873678 ~ 23928150 (-) True G124779
TU156386 lncRNA downstream 1086637 23655984 ~ 23663572 (-) True G124765
TU156319 lncRNA downstream 1454094 23138618 ~ 23296115 (-) False G124719
TU156640 lncRNA upstream 187265 24948150 ~ 24948841 (-) False G124975
TU156641 lncRNA upstream 187265 24948150 ~ 24950358 (-) True G124975
TU156720 lncRNA upstream 613995 25374880 ~ 25433728 (-) True G125036
TU156719 lncRNA upstream 657066 25417951 ~ 25433728 (-) False G125036
TU156721 lncRNA upstream 670756 25431641 ~ 25433728 (-) False G125036
AMCG00002647 mRNA downstream 62367 24686573 ~ 24687842 (-) True AMCG00002647
AMCG00002645 mRNA downstream 343229 24388134 ~ 24406980 (-) True AMCG00002645
AMCG00002643 mRNA downstream 363454 24377731 ~ 24386755 (-) True AMCG00002643
AMCG00002644 mRNA downstream 380427 24348880 ~ 24369782 (-) True AMCG00002644
AMCG00002641 mRNA downstream 538852 24195721 ~ 24211357 (-) True AMCG00002641
AMCG00002651 mRNA upstream 15380 24776265 ~ 24786604 (-) True AMCG00002651
AMCG00002652 mRNA upstream 50471 24811356 ~ 24834198 (-) True AMCG00002652
AMCG00002654 mRNA upstream 124101 24884986 ~ 24916583 (-) True AMCG00002654
AMCG00002655 mRNA upstream 160221 24921106 ~ 24933751 (-) True AMCG00002655
AMCG00002653 mRNA upstream 202910 24963795 ~ 24966409 (-) True AMCG00002653
TU156479 other downstream 410643 24291787 ~ 24339566 (-) True G124848
TU156457 other downstream 488386 24261565 ~ 24261823 (-) True G124829
TU156342 other downstream 1565041 23181921 ~ 23185168 (-) True AMCG00002629
TU156333 other downstream 1597045 23085994 ~ 23153164 (-) True G124719
TU155250 other downstream 6760744 17922452 ~ 17989465 (-) True G123829
TU156949 other upstream 1542997 26303882 ~ 26305923 (-) False AMCG00002688
TU157116 other upstream 2094008 26854893 ~ 26875246 (-) True AMCG00002705

Expression Profile