RNA id: AMCG00002651


Basic Information

Item Value
RNA id AMCG00002651
length 831
RNA type mRNA
GC content 0.59
exon number 4
gene id AMCG00002651
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 24776265 ~ 24786604 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGGTGAGAGACCAAGGGAATGTTACTGCCAGGAAGGTTGCCCAGCTCAGTCCCCCACTGCTGGAGAAAGctgaactggagtttgttcagataatcattataattgtgGTTATGACCGTGATGGTGGTTGTGATCATCTGCTTACTAAACCACTATAAACTCTCCACGTGGTCCTTCATCAACCGACAGAGTCAAGGCAGAAGACCGGAGGAAGCACTGCAGCCGGAGGGGTGCCTGTGGCCAACTGACAATTCAGTATCACGACAAGGAGCTTCAGAGATCATGTACGCCCCGCGGTCCAGAGAGAGATTCCCAGCCCCGGCGTTTATGCAAAGGGATCGATTCAGCCGCTTCCAGCCCACCTACCCTTACCTGCAGCACGAGATCGACCTGCCGCCAACCATCTCGCTGTCGGATGGGGAGGAGCCGCCGCCCTACCAGGGCCCCTGCACGCTCCAGCTGAGGGACCCCGAGCAGCAGATGGAGTTGAACAGGGAGTCGGTCCGGGCGCCCCCCAACCGAACCATCTTCGACAGTGACTTGATCAACGTGGGCGTGCACAGCGGGGGGCCCCGGCCGCCCAGCAGCAACTCGGGCATCAGTGCCACTAACTCCAGCAGCCACGGCCGCATGGAGGGCCCCCCGCCCACCTACAGTGAAGTCATGGGCCACTACCCAGGCTACTCGTTCTTTCTTCACCAGCACAGCAATAGCCCTCCTCCGACGCAGAGGGCAGGAAGCAGAACAGTCCAGCAGAGCAATCCCGAGAGCACAACAATCGTTCCCGTCAAGGCCAACAAGGAAAGCCAGGGGGAGAACCTGGTGTGA

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG:

id description
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156550 lncRNA downstream 199134 24576165 ~ 24577131 (-) True G124907
TU156515 lncRNA downstream 364929 24411029 ~ 24411336 (-) True G124873
TU156401 lncRNA downstream 848115 23873678 ~ 23928150 (-) True G124779
TU156386 lncRNA downstream 1112693 23655984 ~ 23663572 (-) True G124765
TU156319 lncRNA downstream 1480150 23138618 ~ 23296115 (-) False G124719
TU156640 lncRNA upstream 161546 24948150 ~ 24948841 (-) False G124975
TU156641 lncRNA upstream 161546 24948150 ~ 24950358 (-) True G124975
TU156720 lncRNA upstream 588276 25374880 ~ 25433728 (-) True G125036
TU156719 lncRNA upstream 631347 25417951 ~ 25433728 (-) False G125036
TU156721 lncRNA upstream 645037 25431641 ~ 25433728 (-) False G125036
AMCG00002648 mRNA downstream 15380 24750209 ~ 24760885 (-) True AMCG00002648
AMCG00002647 mRNA downstream 88423 24686573 ~ 24687842 (-) True AMCG00002647
AMCG00002645 mRNA downstream 369285 24388134 ~ 24406980 (-) True AMCG00002645
AMCG00002643 mRNA downstream 389510 24377731 ~ 24386755 (-) True AMCG00002643
AMCG00002644 mRNA downstream 406483 24348880 ~ 24369782 (-) True AMCG00002644
AMCG00002652 mRNA upstream 24752 24811356 ~ 24834198 (-) True AMCG00002652
AMCG00002654 mRNA upstream 98382 24884986 ~ 24916583 (-) True AMCG00002654
AMCG00002655 mRNA upstream 134502 24921106 ~ 24933751 (-) True AMCG00002655
AMCG00002653 mRNA upstream 177191 24963795 ~ 24966409 (-) True AMCG00002653
AMCG00002660 mRNA upstream 513097 25299701 ~ 25334662 (-) True AMCG00002660
TU156479 other downstream 436699 24291787 ~ 24339566 (-) True G124848
TU156457 other downstream 514442 24261565 ~ 24261823 (-) True G124829
TU156342 other downstream 1591097 23181921 ~ 23185168 (-) True AMCG00002629
TU156333 other downstream 1623101 23085994 ~ 23153164 (-) True G124719
TU155250 other downstream 6786800 17922452 ~ 17989465 (-) True G123829
TU156949 other upstream 1517278 26303882 ~ 26305923 (-) False AMCG00002688
TU157116 other upstream 2068289 26854893 ~ 26875246 (-) True AMCG00002705

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00027829 False 3192 mRNA 0.48 6 NC_007130.7 12444943 ~ 12622855 (+)
grasscarp (Ctenopharyngodon idella) CI01000320_00531076_00581054.mRNA True 3406 mRNA 0.48 11 CI01000320 531076 ~ 582406 (+)