RNA id: AMCG00002653


Basic Information

Item Value
RNA id AMCG00002653
length 702
RNA type mRNA
GC content 0.47
exon number 6
gene id AMCG00002653
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 24963795 ~ 24966409 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTTGTTCCAGTTGAATGCTCGCCGCCGTCATTCAAAGACTTTACTCTTATTATGccCGCAATATCTGTGGGAAATGTGGGACAGCTTGCGACAGACCTGATTATTTCTACGCTCAACATGCCTGCAGTGGGCTATAtccacactgactgtctgataCCCATGGTAGGAAATAATCCGTATGCATCATCACCAGAGAATTCAGATGAACTGAGCACAAATGCAGAAGTGTATTCTTTAGCTGACATGAAGCTGGCTGTTCTCCAGATCAGGGCACCCATCATACAGACAAAATACAAGCAGTTTCGTAAACTTATCTTCTCATGGATCAAGGCGAGTGAATTCTCCAGAGTCGTTCTCCTGTCCAGCAGTTATGCTTACCAGAGAGATGACCGTCAGATTCATGGCACTCCTCTGCGTTATTTATTCACACCTGCCATGCAGACCATTATCGGGGACAGACTTCAGGATCTGCAGTGGAAAGAGATGGAGAGGATAGCTGCCTTCCCAGGGATCAGTAACTCTGAACAGCGGCTATATATCCCTGGAGGGGGAGTTACTAAAGCCTTGTACACTGACAGCTGTTCTGAAGGGATCCCTTTGGCAGTCTTGCTGACATTCTGCTCTGAAGGTGACAACATCCCAGATGCATTTGCACTCGTCAACTACCTGAACGAATGGCTCCATCTAGTGGAGAAGCCA

Function

GO:

id name namespace
GO:0043248 proteasome assembly biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K11876 PSMG2, PAC2; proteasome assembly chaperone 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156641 lncRNA downstream 13437 24948150 ~ 24950358 (-) True G124975
TU156640 lncRNA downstream 14954 24948150 ~ 24948841 (-) False G124975
TU156550 lncRNA downstream 386664 24576165 ~ 24577131 (-) True G124907
TU156515 lncRNA downstream 552459 24411029 ~ 24411336 (-) True G124873
TU156401 lncRNA downstream 1035645 23873678 ~ 23928150 (-) True G124779
TU156720 lncRNA upstream 408471 25374880 ~ 25433728 (-) True G125036
TU156719 lncRNA upstream 451542 25417951 ~ 25433728 (-) False G125036
TU156721 lncRNA upstream 465232 25431641 ~ 25433728 (-) False G125036
TU156717 lncRNA upstream 484806 25451215 ~ 25453998 (-) True G125035
TU156777 lncRNA upstream 643708 25610117 ~ 25612297 (-) True G125075
AMCG00002655 mRNA downstream 30044 24921106 ~ 24933751 (-) True AMCG00002655
AMCG00002654 mRNA downstream 47212 24884986 ~ 24916583 (-) True AMCG00002654
AMCG00002652 mRNA downstream 129597 24811356 ~ 24834198 (-) True AMCG00002652
AMCG00002651 mRNA downstream 177191 24776265 ~ 24786604 (-) True AMCG00002651
AMCG00002648 mRNA downstream 202910 24750209 ~ 24760885 (-) True AMCG00002648
AMCG00002660 mRNA upstream 333292 25299701 ~ 25334662 (-) True AMCG00002660
AMCG00002665 mRNA upstream 607424 25573833 ~ 25603050 (-) True AMCG00002665
AMCG00002666 mRNA upstream 637758 25604167 ~ 25611494 (-) True AMCG00002666
AMCG00002671 mRNA upstream 681404 25647813 ~ 25676650 (-) True AMCG00002671
AMCG00002670 mRNA upstream 779674 25746083 ~ 25752614 (-) True AMCG00002670
TU156479 other downstream 624229 24291787 ~ 24339566 (-) True G124848
TU156457 other downstream 701972 24261565 ~ 24261823 (-) True G124829
TU156342 other downstream 1778627 23181921 ~ 23185168 (-) True AMCG00002629
TU156333 other downstream 1810631 23085994 ~ 23153164 (-) True G124719
TU155250 other downstream 6974330 17922452 ~ 17989465 (-) True G123829
TU156949 other upstream 1337473 26303882 ~ 26305923 (-) False AMCG00002688
TU157116 other upstream 1888484 26854893 ~ 26875246 (-) True AMCG00002705

Expression Profile