RNA id: AMCG00002655


Basic Information

Item Value
RNA id AMCG00002655
length 1986
RNA type mRNA
GC content 0.48
exon number 9
gene id AMCG00002655
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 24921106 ~ 24933751 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGCGCCAAAGGAAGGATGCAGCGGTGAAAGCAGACACGCCGCTCCAACACGTAATGAAAGTTGGTTGTAAGCAACACATCGGCAGGTTATTTAAACCACCTAAAATACATCTTATGCAATTTTAAGGAATTGGATTGAAGATGTTTGTAGCACGGAGCATCGCGGCGGATCACAAAGATCTCATTCATGATGTTTCATACGACTTCCACGGCAGGAGAATGGCGACTTGCTCCAGTGATCAGAGTGTCAAGGTGTGGGACAAAAGTGAAAATGGAGAATGGAACTGCACAGCTAGCTGgaagACTCACAGTGGTTCGGTGTGGCGAGTGACATGGGCCCACCCAGAGTTTGGCCAAGTGTTGGCCTCCTGCTCCTTTGACAGAACAGCTGCTGTGTGGGAGGAAATTGTGGGCGAGTCCAACGACAAGCAGCGCGGACAGAGTCACTGGATTAAGAGGACAACGCTCGTGGACAGCAGGACGTCAGTGACAGATGTCAAGTTTGCCCCGAAACACATGGGCCTGATGCTGACCACGTGCTCGGCGGACGGTGTTGTACGGATCTACGAAGCCCCAGATGTGATGAACCTCAGTCAGTGGTCGCTTCAGCACGAGATCTCCTGCAAACTGAGCTGCAGCTGTATTTCCTGGAACCCCTCCAGCTCCCGGGCTCATTCTCCTATGATTGCAGTGGGAAGCGATGACAGTAATGTTGGCTATGGTGGCAAAGTCCAGATATACGAgtacaatgaaaacacaagGAAGTACGCCAAGGCGGAGACGTTGATGACCGTCACGGATCCAGTCCACGACATCGCCTTCGCGCCGAACCTGGGGAGGTCATTCCACGTGCTGGCAATTGCGACCAAAGATGTCCGCATTTTCAAGTTAATACCTCTCCGGAGGGAAACCAGCACTCCGACGGGACCAACTAAGTTTGAGGTGCAGATTGTGGCCCAGTTTGAGAACCACAACTCCCAGGTGTGGCGAGTGAGCTGGAACATCACCAGTACCTTGCTGGCCTCCTCGGGCGATGATGGCTGCGTGAGGCTGTGGAAAGCGAACTACATGGATAACTGGAAGTGCACCGGGATCCTGAAGGGGGATGGCAGTCCTGTGAATGGCTCCTCCAGTCAGCAAGGCATCTTGAACTCGGCAGTGGGCTCTGCTGGCCAGACCTCCCAGAATTCCCTGAACGGCTCGTCAGCAGGAAGGTATTTCTTTCCCCCTCTGGACCCCCCATGGGCTGGTTCGAGATGGTCCAGTTATGCCCAACTACTGCCTCCTCCTACACTGATAGAGCAAACTTGTGATGCTGATTCTGCCAACCTGCAGCTTCCTCATCCTCGCAGACGATATACCACACGACCCCTAAACCCCTTGCCAGAAAACGAAGGGGTCTAAAAgggtttaataaaaataaactaaaaagtaacaaaaaaaacactctaGGCCTTGCTTACTcaaacatgttattttgtttctgctttccTTTCAGTCCCTTtacttatctttttttattttatttttcctccctgCTTTTTCCTGGAAGGctttgtggatttgtttttgatgttccTTTGTTTAGTGTTCCTTTCTCACACCCCCTACCTGAATGCCTGCAGATAAATCGCTGCATTCTTTGCAACGATTTCTTTGGATTCTTTTACGAAAGGAAAAAAATCGAAACACAAAACTGTGGAAGGAAACCAACTctgaaatattgtatatttaaggTTGCTTCCCAAGTGCCTGTACTTCCAGTATGCATTGTTTCTTTGCACTGATAAGTTTAATATCATAAACTGCTGTTTTGCTAATGTTGGAAATGTCTGTTCTTTCAAACTTGTCCGAAGTGCCATTCCTGCTACACCATATCTAAATCCcgatttaaataaaaaggtggGTAATTGTCAGAATCGTTGTTGATGTCAATGATACACTTTgaaatcaaacaataaaattTTTGGTGAAAGATtgaaaaaa

Function

GO:

id name namespace
GO:0051225 spindle assembly biological_process
GO:0051298 centrosome duplication biological_process
GO:0005813 centrosome cellular_component

KEGG:

id description
K14299 SEH1; nucleoporin SEH1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156550 lncRNA downstream 343975 24576165 ~ 24577131 (-) True G124907
TU156515 lncRNA downstream 509770 24411029 ~ 24411336 (-) True G124873
TU156401 lncRNA downstream 992956 23873678 ~ 23928150 (-) True G124779
TU156386 lncRNA downstream 1257534 23655984 ~ 23663572 (-) True G124765
TU156319 lncRNA downstream 1624991 23138618 ~ 23296115 (-) False G124719
TU156640 lncRNA upstream 14399 24948150 ~ 24948841 (-) False G124975
TU156641 lncRNA upstream 14399 24948150 ~ 24950358 (-) True G124975
TU156720 lncRNA upstream 441129 25374880 ~ 25433728 (-) True G125036
TU156719 lncRNA upstream 484200 25417951 ~ 25433728 (-) False G125036
TU156721 lncRNA upstream 497890 25431641 ~ 25433728 (-) False G125036
AMCG00002654 mRNA downstream 4523 24884986 ~ 24916583 (-) True AMCG00002654
AMCG00002652 mRNA downstream 86908 24811356 ~ 24834198 (-) True AMCG00002652
AMCG00002651 mRNA downstream 134502 24776265 ~ 24786604 (-) True AMCG00002651
AMCG00002648 mRNA downstream 160221 24750209 ~ 24760885 (-) True AMCG00002648
AMCG00002647 mRNA downstream 233264 24686573 ~ 24687842 (-) True AMCG00002647
AMCG00002653 mRNA upstream 30044 24963795 ~ 24966409 (-) True AMCG00002653
AMCG00002660 mRNA upstream 365950 25299701 ~ 25334662 (-) True AMCG00002660
AMCG00002665 mRNA upstream 640082 25573833 ~ 25603050 (-) True AMCG00002665
AMCG00002666 mRNA upstream 670416 25604167 ~ 25611494 (-) True AMCG00002666
AMCG00002671 mRNA upstream 714062 25647813 ~ 25676650 (-) True AMCG00002671
TU156479 other downstream 581540 24291787 ~ 24339566 (-) True G124848
TU156457 other downstream 659283 24261565 ~ 24261823 (-) True G124829
TU156342 other downstream 1735938 23181921 ~ 23185168 (-) True AMCG00002629
TU156333 other downstream 1767942 23085994 ~ 23153164 (-) True G124719
TU155250 other downstream 6931641 17922452 ~ 17989465 (-) True G123829
TU156949 other upstream 1370131 26303882 ~ 26305923 (-) False AMCG00002688
TU157116 other upstream 1921142 26854893 ~ 26875246 (-) True AMCG00002705

Expression Profile