RNA id: AMCG00002660


Basic Information

Item Value
RNA id AMCG00002660
length 5301
RNA type mRNA
GC content 0.42
exon number 16
gene id AMCG00002660
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 25299701 ~ 25334662 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCCATCTGCAAGCACACTAAAGAACTACTTTCTTTGGAATAAGTATTACCTTTGGGTTTAGTAGTGCTGTACTGGATCTAACACATTCAAGTGTTTATTGCGCCCAGTGCACTGTCTAGTGCCACTGCAAGCTGTACCTGCCAGGTGAATGGGCTGAGAAAGAagtggagaaacaaaaaagttgATTTACCTGTAGCCCGAGTTCTGCCATCTCTCTCCCAGTTCGCTCTTACACCTTTACCTGCACAGACTTGAAAGTCCAGTTTCACAAGCAAGAACAACAGAGGGAAAAAGGGGAGTTTGCTGGAGCAAATATGTCACAGGAGACGGACAATAAgcggctggtggtggtggttccCAATGAGACCTCGTTCCACCCGCGACGGGCCTACACCAGCGAGGATGAGGCCTGGAAGTCCTACCTTGAGAACCCCCTAACCGCTGCCACCAAGGCTATGATGAGTATCAATGGGGACGAGGACAGTGCTGCAGCCCTTGGCCTGCTCTACGACTACTACAAGGTTCCAAAAGAAAAGAGATTGTTACCCTTAACCAAAGTAGTCGAAATTCAGGAAGACCATGAAAAGAGGACCTGTCTTGCTGGGACTGATGGACAGGGGGATATGGAAGGGGTTGACAATCGTGTTCAGGTGCTGAAGTCAGTGCCGGTGAACCTGTCCCTGAACTCGGAGCACCTGGACTCGACCAAGCGGGAtcagtacagcacagccccTGCTGAGACTGGCCCTGGGGGGGTGCCCGCAGTCACGGTGGTGAAGGCGGAGGTGTACGCCCCTGTTTTCATGAGCCCTGGCATCCACTACAGCCGGGGGGAGACGGAAGAGCAGCCGAGAGTCATCTATGAGCAGGGCACCTATGATAAATATCGGACACCATCTTTGGGAGGTGAAGAATTCATCTATGACCCATCAGGAGTAGATACCTTCCAGTACACATTGGAAGCCACAAAGTCTCTACGACAGAAGCAAGGAGAGGGGCCAATGACGTATTTAAATAAGGGGCAATTCTATGCGGTGACACTGAGTGAGACCGGTGCCAACAAATGTCTTCGACACCCGATTAGCAAAGTCAGGagtGTTATCATGGTGGTTTTCAGTGAAGACAAGAACAGGGACGAGCAGCTAAAGTACTGGAAATACTGGCACTCACGGCAGCACACAGCCAAGCAGAGAGTCCTAGACATAGCTGACTATAAAGAAAGCTTTAACACAATCGGGAACATTGAAGAAATCGCTTACAATGCTGTCTCCTTCACCTGGGATGTCAATGAGGAGGCAAAGATTTTCATTACAGTGAACTGCCTGAGCACAGACTTCTCGTCTCAGAAGGGAGTGAAGGGGCTGCCACTGATGATCCAAATCGACACGTACAGCTACAACAACCGCAGCAACAAACCCATCCACCGGGCCTACTCCCAGATCAAGGTCTTCTGTGACAAGGGAGCAGAGAGAAAAATCCGTGacgaagaaagaaaacagaaccGCAAGAAGACGAAAGGCCAGGCAACTGCAAGCCAGTGTAACAATGTAGCAAAAGACGGCAACCTGTCTGCGTTGCCCTTGCAGAGGAAGGCTGACACTACCTACTTCAAAACCATGACGGACCTGGACTCTCAGCCAGTTCTCTTCATTCCTGATGTTCACTTTGGGAACCTGCAGAGGACAGGGCAGGTCTTTGCTTTCAACACagaggaggtggagagagatGGTAGTGTGTTGGTGAAGAGGATGTTCAGACCAACTGAAGATGACTACTGTCCTCCCCCGCCCAAGCAAGTCAAAGAAGAAGTGCACAAGAGAGTTCTTCTCTATGTACGGAAGGAATCGGATGAGGTGTTTGATGCTCTCATGCTCAAGTCACCAACCTTAAAGGGTCTTATGGATGCAATATCGGAAAAATACGGCATCCCCATAGAGAAGATGGCTAAGATCTACAAGAAGAGTAAAAAAGGCATTCTGGTCAACATGGATGACAACATCATTGAGCACTATTCCAACGAAGACACTTTCATCCTTAATATTGACAACTTTGCCGATGCCTACAAAGTCACACTGACAGAAATCTAATAGACTGGATGTGTGCCGGCCTCCCAGGAAGAGGTTAGGGGCCACAGTGCTGAAACCTGTCCTATAGAGACCACAGCGTTGTTTACCACAGCAGGGTGGAGACTCTCTCAAAGGAATGGACCCCTTCTGTAAATATTCGTTTTCTCAGCCAGGTCAACCATTGcggatgtatatatttatgtatatatgccTAATATGTAAGTATGAGAAGAGAAGCTGTCCATTTAGAAGGGGAGTAACAGTCTTCCTGTCCTTTAGGCCCTTTGAGAgatggaattgttttttttgttttttaaggggGGTGGCATCTGAGGTTACGGATacactgcatatttttttatgcagtaGCATTCTATGTAACTGGCTGTGAAAGCATCATacagataagtggaaaaaacaaatcatgccAAGTCTCTTAGCGCTGCAGCCTGCCTGGGGGCGGCACAACAGGTGAGCTGTGCCATAACTGCAGGACACGCAGAGAAAGAAGGGAAGAGGCCACCTCTCTCTGAACCTCGTTTGATCATCAAGGACTTCTGACCCAGATAATGTGTTGGGGGAAGAATAGGCATATCCTCTCTGTGTTTGCTGACTCATACAGAGGAAACAGCCCCTTCACTGAGGACAAGCTGGGCTTCTGCACACATCTAAGCCAATGAATACTTGGAATCCTAAAGTTCTCTACGATGAGGCCGCGACTCCTGTCATCTTCTTAGTACATCTGTTTGGACGTGTATAACGTTTGCAACCTCTGGTTCTCTTAGAAAAAAGCTAACAAATTTGTGAAAATAGCATTGACAACACTGACATATACTGTACACGGAGTTTACTTccagatatttttaaatccatataCTGTGTTGTTAAATTAGGATCATCCTGTTGGCTGATTCATAAGCTTGGTCCTCTTTCATAGGAAACCTTTTTAAAGGCACATTTAATGAACTGTTGCTGCAGATTGTAACGCAATTATTAACtttgtttacagtttttaattgtattttttacattccaGTCTTGACAAAGTAAACTGCTGTCATCTAAACAACGCTAGGTTTAATTCTCCTTCCTGGAAGAGTAATTGTAAACCATTGATCTCACTTGAGCTGCATCCCTGTGGGTCCatagtcattttatttgtacattttaattttcttatgaatttacttaatttatttattgattgcattttatttttcactttggtTTTGTCACAAAGTGTATTAAGGTCGCTGGTTCTATGGTCAATGTGCAGAAGCAGTCTGTCCTTGAGTATCCTACTTATCTCAGTGGCTACGGGGCAGGAATGGTGAAAGCATTGTGGTGCAAATATATCCAGCATatgtggagaaaaaataaatgaatgtaataaCATAACCAATATTGCACTACTGTGCACTGGTTGAACAAGAAATCCTTCCTCCAGTACCTGCTCAGAAGCCCTTAAGAAAAATCCCAGCAGTCCACACTAGATTCCTAGTCGTTGGTAATGAATGAGGCACAGTTAAAATTGAGAAAAAGTGTGATTGCCCTTCTACCTGATTCCAACCATccacccaaacaaacaaacctctTAAAGGCATCCAAAAGTCATTTACAAAATTAGACCGTTACAGTGATTATTTGTGAAAACCGCAAGATGTCACCGCTTCAGTCAGTTCTCATCCTAATGTTGCTGTTTTATTCCTCTACATTTGAATATAGTATTGTTCACACTGCCTTTTTACTTTTCAGACCTCAGAACTCACAAATCTAATGCAGCCTAACAATATCTAACTAATGGTAGAAGCCATTTGTGCAATCAAGACTATAACTGCATACATCTAAAGAAAACCAATCCTAAGAACCATCCCTCTATTCTAACATccctaaatatatatgttttgtatgtgtatgccTGTGCCAATGACTCACAGCACTAGCTAGATGTAAATgctctttaattatttataaatgtgtatgaatTTGGAACTTTCATTGGCTAAAGATGATCAATGTGGCGGGCAGTCCTTACATTGTCACACAGCAAAGTTATGAAACCTTATTTTAAACTCTTTTTTGGTCTAATACCTCGAATGAGCTTCAAACCTAGCAAAATGAAGCCTTTGAGCCTAACACTATATTTTGGGTTTGATCAGTAAACATGCTCTAGTAAAATCATTTGTACGAATGTTAATGCCAATGTGCAATAATATATGcaatgttttgcacatttacaGCCATAGATATAGTGCACGGGATGAGGTTTATCTAAAGTGTGCTTTTAACTGCAGTtgtggatattttattttattgctgtacaGTGAAAGCTGTGAAAGTTGTTGATGAAATTAGTTAAAAGTCTGTATTACTACTGGGTTAATTAATGGAGCTGCCATTCTAACATCAAAATGATTtaacatagattttttttttaccagaatGTTAtcatttaaagttttatttttagtttaattgaaggGATCAGTAGCATTGAGTGGCACAGAACTGCAACAGCAAAGAAGATACATAATTattgtgcatattttaaatcacaaaataaccattaaaacaaacacatggacATTGTGGATGAAATTAGGATCATCTACTGTGGCAGTCAGGAAATCAACCCATTAGTACCAGGTGAATATTGTTCATTTTGCTTTGAGATTCCTGTGCCATTTTGTGTGTCATGTAGCAATATTACTTTCCTTAATATTGTTTAGGTATAGTATGTCTCCATTGTTCCCCAGCCTTCTACTTCCATCCaggttttttctgtttttgaaaaacaaaaccccaaaaagCAGCAAGGCCTGTGGGTACTGTGAAATTATGAGCGCAATCCCTGCAGGTTGTAATATGTTCCCTGTCCTCAAACTGCCATTTGAAAAGTTCGAAGTAAACAAAGGAAACCAGAGGGATATATTAAAATTTACCACatgtcaaaaaataataaaataaagaggcACTAGAGTTAATATACTGTGCTGCATTAAGAAAAGCatgtatggaaaaaaaaaaaaaaaggtgtaaaTATCAATCTGCTGCCAATTTAGACAATCTGTGCCAACTGCTTTAGAAGGTGTTTTTAGTGAGGGAGTTGGGCCAGGCacttgtttatatttgtgttgaaGGGCCATtggttctgttgttgtttttgtaattaaaaaaaatctatattttgtacatattttttttaatgagaaaataaataactacaaacCAAA

Function

GO:

id name namespace
GO:0021555 midbrain-hindbrain boundary morphogenesis biological_process
GO:0048839 inner ear development biological_process
GO:0060561 apoptotic process involved in morphogenesis biological_process

KEGG:

id description
K09275 TFCP2; transcription factor CP2 and related proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156641 lncRNA downstream 349343 24948150 ~ 24950358 (-) True G124975
TU156640 lncRNA downstream 350860 24948150 ~ 24948841 (-) False G124975
TU156550 lncRNA downstream 722570 24576165 ~ 24577131 (-) True G124907
TU156515 lncRNA downstream 888365 24411029 ~ 24411336 (-) True G124873
TU156401 lncRNA downstream 1371551 23873678 ~ 23928150 (-) True G124779
TU156720 lncRNA upstream 40218 25374880 ~ 25433728 (-) True G125036
TU156719 lncRNA upstream 83289 25417951 ~ 25433728 (-) False G125036
TU156721 lncRNA upstream 96979 25431641 ~ 25433728 (-) False G125036
TU156717 lncRNA upstream 116553 25451215 ~ 25453998 (-) True G125035
TU156777 lncRNA upstream 275455 25610117 ~ 25612297 (-) True G125075
AMCG00002653 mRNA downstream 333292 24963795 ~ 24966409 (-) True AMCG00002653
AMCG00002655 mRNA downstream 365950 24921106 ~ 24933751 (-) True AMCG00002655
AMCG00002654 mRNA downstream 383118 24884986 ~ 24916583 (-) True AMCG00002654
AMCG00002652 mRNA downstream 465503 24811356 ~ 24834198 (-) True AMCG00002652
AMCG00002651 mRNA downstream 513097 24776265 ~ 24786604 (-) True AMCG00002651
AMCG00002665 mRNA upstream 239171 25573833 ~ 25603050 (-) True AMCG00002665
AMCG00002666 mRNA upstream 269505 25604167 ~ 25611494 (-) True AMCG00002666
AMCG00002671 mRNA upstream 313151 25647813 ~ 25676650 (-) True AMCG00002671
AMCG00002670 mRNA upstream 411421 25746083 ~ 25752614 (-) True AMCG00002670
AMCG00002674 mRNA upstream 453721 25788383 ~ 25822702 (-) True AMCG00002674
TU156479 other downstream 960135 24291787 ~ 24339566 (-) True G124848
TU156457 other downstream 1037878 24261565 ~ 24261823 (-) True G124829
TU156342 other downstream 2114533 23181921 ~ 23185168 (-) True AMCG00002629
TU156333 other downstream 2146537 23085994 ~ 23153164 (-) True G124719
TU155250 other downstream 7310236 17922452 ~ 17989465 (-) True G123829
TU156949 other upstream 969220 26303882 ~ 26305923 (-) False AMCG00002688
TU157116 other upstream 1520231 26854893 ~ 26875246 (-) True AMCG00002705

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00027823 True 1786 mRNA 0.49 15 NC_007130.7 12237945 ~ 12290141 (+)