RNA id: AMCG00002665


Basic Information

Item Value
RNA id AMCG00002665
length 4014
RNA type mRNA
GC content 0.46
exon number 18
gene id AMCG00002665
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 25573833 ~ 25603050 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCATAAGTTCAATTTAGCAGCCATGAGTGCTGAGCAGATTTCCTCGCTGTTGGATCGGGGAGTGACAAAAAACTGCCCAATTCCCGTGGATCATTTGGACTACGCTTTCATAGAGTATTGCACTGACGTGAAGTATCTGGAAAGGATACTGAGAGTGTTAAGGTCTGGTGAGGAAGGGTTATACCCTCATCTCACCGAGTTCTGTGAGAAGCACATCGAAAAGCTGGATCCCAGAAGCCGAACTCTTCGGAAAGATCAGCCTCCAGCTACAGCAGCCAGCTTTTCCTCAGAAGAGTGGTCAGAAATCGCCAACGATTTAAAGAATTGGACAAATGAAGTTAAACAGAATGAAGCTGAACTTAAACACCTGGTTGTTTTGGAAGATGTAGAAAACGTGCCACCGGTGCGTGGGTCAAATTTCTCTGTTCCTTTAACACAGCAGAATAATCCCAACGCTGAAAGAACTAATGCAAAGAAGAGGGTTGCTCCTCGTGATTACAGAGAATGGGACACgttTGACCCTGATGAGGAATGTGCTAAAATTGATGGGATGGCCAGTGAGAAAAGCTCCCCGGCAATCATCCATCATGCCCTTCCTAAACTAAAACGAAAAATAGACACAGCAGCTTTAACTGAACATGAAAAGAGACTCCTTTCAAAtcatgagaaagaaaaaggcaacGAGGCTTTCAGGGCCATGGAGTATGAAGAAGCTGTGGAATATTACTCAAGGAGTCTGTCAGTGCTGCCATCAGTGGTTGTCTACAACAACCGAGCTCAGGCACAGATCAAACTCCAGCACTGGCGCAATGCCCTCAATGACTCATTGCTGCGGCGTGCAACTGTATACAAACACATGGGTGACTTGAAGCCAGCTGCTGATGACTTGAAGAATATACTAGAAGCTGAACCATGGAATTTGACTGCAAAAAATCTTCTGCTTGAGGTCAAAGAAAGAATGACAGATTGTGAGCCAGAAGAGCAGCGAAGGGGAAAGCGACTCTTCATTCAAGATGTGGATGAGCCAGAGGAAGCAGAAGAGGGAGCAGAAACCAGCCTGCATGTGGGTGGGGAGATAGCTGCTTCTGCTGTTCAGGGAGAAATGGGGAACGCTCAGAGAAAGTTTCCCAGCAGAGGAGATTGGGGCCCCCAGACGGAGGAGAAGCCCTCTTTCACCGGCAAGAAGGAGAGGGGTAAAGCAGGCAGTGCAGAGAAGGACAGAGCCCAGGGGGACAGGGCTACAGAGCAGAAGCCGGTGAACGGAGCGCAGGAGAATGGGAGCTGTGCAGGTGACCAGAGCAGTGTCGGTGGCTCAGGTGCTGAGAGCAGCAGGCCTGAAGTCAGCACAGGATCCCTGCCCCCCACTCTGGCCACACTGAAGAGTCAAGGCAATCAGCTCTTTAAGAATGGACAGTTTGCAGATGCCTTAGTTAAATACACCGAGGCCATCAATGGCTTCACAGAGGCTGGTGTTGACAGCCCTGCTGATCTCAGTATTCTGTACTCAAACCGAGCTGCATGCTCTTTGAAGGATGGGAACTGCTCTGATTGTATTCAGGACTGTACCAGAGCCTTGGAGCTTCAGCCTTTCTCTATCAAGCCTCTTCTTCGGAGAGCCATGGCTTATGAGTCACTGGAGCGTTACCGGCAAGCCTATGTGGATTATAAGACTGTGCTTCAGATTGACAGTGGGGTGCAGGCTGCCAATGACAGCGTCAACAGGATCTCAAGATTGTTGATCGAGCAGGATGGTCACAACTGGAGGGAGAAGCTTCCTGAGATCCCAGTGGTGCCCCTGTCAGAGCAGCACAGACGGGAGGAATCTGCATCCAGCTCTGAGCAAAGACAGGAGCGGGGACACAGCAAGCCTGTGCAGGATACAGGTAAAAAATTAGAAGCCCATTTCCTGTCTTTGAAACAAGAAGGAAATGACTTTGTGAAGAATGGCCAGTATAAGGCTGCAATTGGAAAaGCCCTGTGTTATTTAAAACTCAATCAATTTGTAGAAGCAAAACAGGACTGTGACTCTACCCTGCAGTTCGAGCCCTCCAATAAGAAAGCATTTTATAGAAGGGCTCTGGCCTACAAAGGTTTACAGGACTATGCTGCTTGCTGTGCAGACCTGCAGGAAGTGCTACGGCTGGACCCAAGCGTTCAGGAAGCCGAGAaagagctgcaggaggccaGGGAGCTGCTCAGACAGGAAAGCCCCCAGGACAAACACAGAAGGACTATCCCCATCCAGGAGGTGAACGACAGCGACGAAGAGGAGAGCGAAAACACCGCGGACACGAGCAGCGCCACAGACGGAGGAGAGCTCAACTACTGTGCGGCCAGACAGACCTTCCCCTCGCAGCCCACTAACGCATACGAGTTTGGCCAGGCCCTGAACGCAGCACGGTCAAGAGGGGATGCTGGTGCCTGTGCAGAACTACTGTCCAGCATTGAGCCAGAGAAACTCCCCTCCTTCATGAGCAATAAGTTAGATGGAGATGTCTTTAACTTTATTATAAAGGCACTTTACAAACATCTACTTCAGAAAGACCCTGACCTTGTGTACCAGCATCTAAGCCACCTGCATGAAGCAGAAAGGTTCAAGGTGGTACTGCTGCTTTTGGACAAAAGTGACCATCAGCAAATAACAGAACTGTTTGAGCAGCTGTCCAGAGCAGACTGTGATGAATTCACAGTCGATGACCTCCAGCATCTTGCAAATAAGTATGTTGTTTCATGAAAGCACTACCTTCCAGCATGCTTTTATTGGGAGTTGGATCTATGCAAACTGTATTGGCTTATTTTTGATATTAAAGCTGTATAATGCattgtggggggtggggggtgactACTTTAAATTGTACCTCTATTTATTGTTCCATGCTATAAACAAAAATCCTTTAACAGAAGGTCTAACAATTTAGGGGGTGTACACAAACATTTTCTATTGTTTACAGTCATTTAGGGGGTTCTACATTAAAGCATCAGGGTACAGAAATCTTCCCACACAGTTTCACAAACATTGATTTCAGTGGAAGTAATCCCATTAGATGAATATCCTAATTCATGCATTTGCGTTAGTGCAAGATGACAGATCATATTTCTATTCTGGGTCTTCAGTGCCAGTGCCAATGCCAATTGGTCGTGGGGGGGTTGATGGCAGGCAATGGCCCTGGAGTAGAACCAGTTTATAAAAAAGGCCAGCATTTCAACTGTGCCTGAATACCCCAGACACCCCTACAGAGGGGGAAAGTACATAGTGAAACTCATTTGttagaaattaaaattgaaatgtgctGTAACCAAATTGGCGAGCTGTGCTTTTGATGGGAGAGGAGCTGGATTCAATAGGCCACACACTCAATCAGTGGTTTAGGGTTCAGATTGCTGTCTGGTGAGAAAGGGCTGTGTATGTACCTTCTACTGCAATCAAGGGGCTACCTTATTATTAGGGAACTACTTCACCTCAAGAGTCTAAATGATCtccatgttttaatttccaaCCATGGCATGGGTTGGGACTGGTTAATCAGAATTCCacgagacttttttttttgttgaacttacagtaatttgaattgaatttagtaaatatagttttgtctaccaaaataaaacactgaattggTTTTATTCTTAAATGAGAACCTTTAGAATGAATGGTCTAAACCTGATCTAATGTTTAAGACCCGAGTAATGTTTCTTATGACAACAGTTTGCTTCCGTTACCAAATGCTATGAGAAGGCAAGTTGATCACCATTGTCAATAAACCACAGCGGAGGACCTGGAAGGAGAGATGTAGTACCTATGCAGTAAACAGCATTACCAAGCAATACAGTAAGCACGGTGTAagatttctgaagaaaagatgTCCACTTGATAGGACTGTGTACATGTCTTCCACTCAGGTTTCTAAtggtatgtaaaatataatattttaagagGATGTATAGATAAGTTGTTccatgagaaaatgtattttaaatttaaaaagtctgtcttttttttttttttttt

Function

GO: NA

KEGG:

id description
K19870 SPAG1; sperm-associated antigen 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156717 lncRNA downstream 119835 25451215 ~ 25453998 (-) True G125035
TU156720 lncRNA downstream 140105 25374880 ~ 25433728 (-) True G125036
TU156719 lncRNA downstream 140105 25417951 ~ 25433728 (-) False G125036
TU156721 lncRNA downstream 140105 25431641 ~ 25433728 (-) False G125036
TU156641 lncRNA downstream 623475 24948150 ~ 24950358 (-) True G124975
TU156777 lncRNA upstream 7067 25610117 ~ 25612297 (-) True G125075
TU156879 lncRNA upstream 523504 26126554 ~ 26130462 (-) True G125160
TU156899 lncRNA upstream 601842 26204892 ~ 26205871 (-) True G125178
TU156922 lncRNA upstream 639204 26242254 ~ 26242531 (-) True G125200
TU156942 lncRNA upstream 672419 26275469 ~ 26279621 (-) True AMCG00002682
AMCG00002660 mRNA downstream 239171 25299701 ~ 25334662 (-) True AMCG00002660
AMCG00002653 mRNA downstream 607424 24963795 ~ 24966409 (-) True AMCG00002653
AMCG00002655 mRNA downstream 640082 24921106 ~ 24933751 (-) True AMCG00002655
AMCG00002654 mRNA downstream 657250 24884986 ~ 24916583 (-) True AMCG00002654
AMCG00002652 mRNA downstream 739635 24811356 ~ 24834198 (-) True AMCG00002652
AMCG00002666 mRNA upstream 1117 25604167 ~ 25611494 (-) True AMCG00002666
AMCG00002671 mRNA upstream 44763 25647813 ~ 25676650 (-) True AMCG00002671
AMCG00002670 mRNA upstream 143033 25746083 ~ 25752614 (-) True AMCG00002670
AMCG00002674 mRNA upstream 185333 25788383 ~ 25822702 (-) True AMCG00002674
AMCG00002672 mRNA upstream 333152 25936202 ~ 25989563 (-) True AMCG00002672
TU156479 other downstream 1234267 24291787 ~ 24339566 (-) True G124848
TU156457 other downstream 1312010 24261565 ~ 24261823 (-) True G124829
TU156342 other downstream 2388665 23181921 ~ 23185168 (-) True AMCG00002629
TU156333 other downstream 2420669 23085994 ~ 23153164 (-) True G124719
TU155250 other downstream 7584368 17922452 ~ 17989465 (-) True G123829
TU156949 other upstream 700832 26303882 ~ 26305923 (-) False AMCG00002688
TU157116 other upstream 1251843 26854893 ~ 26875246 (-) True AMCG00002705

Expression Profile