RNA id: AMCG00002671


Basic Information

Item Value
RNA id AMCG00002671
length 4191
RNA type mRNA
GC content 0.58
exon number 20
gene id AMCG00002671
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 25647813 ~ 25676650 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCTTCACATCTGCATCGAGGGCTGGGGAAACTGGCGCTGGTCCGAACCTTTCAGCATAGACAACGTTGGGACACTCATAAGAACCATCCAATACAAAGGCAGGACGGCCTCACTTATCATCAAGGTTCAACAGCTTAACGGAGTGCAGAAACAAATTGTCATATGTGGCAGGCAGATCATGTGCAGCTACCTCAGCCAGGACATCGAGCTGCGTGTGGTACAGCATTACGTGGGGCCGGACGGTCAGACAGTGGTGAAAGAGCATGTCGACTGCCTGGCTGCTGCCCAGAAGCTGACGTCCTATGTGCTGGAGGACGCGGAGCTGACAGAGCTGTGCGTGCGCGCCCGAGGGGATGAGGAGTGGTCTCGTGACGTGAGGCTAGAGTCCAAAGACAGGGACAACAGCTCCGTGGTGCAGgtGCCCTGTTCCAATGGCTCCCTGTTATACGTGTGGTGTACAGTCATTGCCATTGAGCCCGACTGTCAGATGCAACAGAGAATGGTCAGCTTCAGCCCACTGTTTGTCATGCGGAGTCACCTACCTGACCCAGTCATCATCCACATTGACAAGCGCAGTCTGGGACTGAAAGAGTCCCAGCTGATTTATGGGCAGGGACATGAGGAGCCCCTGGTCAATGTGGAGCCAGACCTCATGCATCACCTAACTTTCCAAGCCAGTCGCAAAGCAGCTCACAAGATAATGCCCATCTCCACAGCGCTCATCAAGCAGATTGTGAACAAAACCCAGGGCCAGAGTCAGGCGCAGCTCCTCTCCGAGTTCTACTCAGTCAAGTCCTCATCTCAGTCACAGTGGCCTTATATCAAGAAGGACTCGGACAGGACTGCTGCAGGGCAGCTTGCCCTCTGGGACAGTCCCATGCAGGTGAAGCTGTCAGCGTGGAAATCTGGTCTCAACACGCTGCTCGTTGAGCTCCTGCCCTGGGCTCTGCTTCTTAACCGCTCCCAGTGGGACCTCTGGCTCTTTGAGGGGGAGAGGATTGAGCCCTTTCAGATTGGCATCTACTGGGCCAATACCAATACAGTGCACAAGTCCACAGCCCTGAAGCTGGTGCATGACCTGACCTCGCCCCGCTGGAAGGATGGCACGGGGGCAGAGGTGGTCACCTTAGATGAGGAGGGCTTTTTGTGCCAGTTCTGCGTTTCCTCAGTGGTGAAGCATGGAATTCAGATCCTCCAGATTGAGGACAGGACCATAGTGGTGAACAACACACCCCACCCCATCTACTACAGGCCCATTCTGTCTGACACAGCCCTGGGCATTGGAGACCAGcCCTTTGACCTTCCAGACACTGCTGTGTTCACCCTCAGCCCTGCTAGCAGCCAGGCCTCCCCCGAGCCCTGCTCCGTACCCTGCTGGGACCTGCTCACTGACTCTGGCCTTGAGGATGCGGAAGCCCCTCTCCCCCTCAAACACATGCTCTTCAGCTCTTGCTCCAGTGCCGAAGCTGGCAGCGCGGGAGGCGCAGGCTGCTGGAGTCTGCCAGCCAGGATTAGGCAAGACTTTCCTAGGCAGAGTGTGGCCGTGCCCACAGATCTCTGCGGCCAGAGTGGGATGTGCACCAGGTCTGTAGTCCTGACTTACCAGGAGCACCTGGGCATCACCTATATTACTCTGAATGAAGACTCCTGCCCTCGCATGATAATCCACAACAAGTGTTCCATCCCATTCCTGATGAAAGAGAATGTAAAAGAGACGCCCAGGACCGAGGTGTGCTGCAGGCCCCTGCCCGCCGAGTCCTCCCTGCACCACGAGCTCTACTACCACTTCTCCAGCTTCCCAGACTGCCGGCAACGGGAGGCCCTTCCCACCATCCTGCTGAAGGCCGCTCAGGAGGGCCAGCCTGTGGAGGAGTGGAGCGACGCTATTGATATCAACAGCCCTGGCACACAGGTACCCACTCACCCACTTGTGCCCGGTCTGGAGGCAATTCCCCAGTCCAGTgTGGTGTTTCTGCCAGGATATGGCTGTGTGTACATTGATGTGTTGCAGCAGAGTGGCACAGTGACACTCACCTTGGCACCTGAGGGGAGGGCAGATGCTGTTCTCAACCAACACCACAGACCCGTGCAGTGCACCCTGGCGCTCCGCGTGCTGCTGAGTGAGGCCAGCCTGGGCGTGAGGGACGACATCACCAGCCAGGTGGGCTCTGCAGAGCTGCTGCGCCTCACACTGTCCCGGGTGCTCCTGAACGTGGCACCAGCGCCACCAGCCTGTGGGGGagaggggctgggggggctgtGCGCTGTGGAGGTGCACTGCGGCAGCCTGCAGGTGGACAACCAGCTTTACAACCGCGCCAGCTTCCACTTTCCCGTGCTGCTGTGCCAGGAGCAGAAGGCCGACCTGCTGCCCTGGTCCTGCGATTCGAACCCCACAGTGTCCCTGCAAGCGCTGGAGGAGTACAAGAGCTCGTGCTTCCTGCAGCTGAGCCTCATGCTGTCCCCCAATGTCCTCAGCGTGGACGAGGTCTCCTTCCAGCTTCAGCCAGCAAGGCTATACCTGGAGGACACCTTTGTGTACTACATCAAGACGCTGTTTCACACCTACATCCCCGACACAGCCTTGAGTAGAAGTCCCACTGTCAGCCCCACCGGTGCCCTGCACCTCCCTGAGCAGGTGCAGCAGTCCATTCAGGCGCTGGTCCACCCGGTGAGGCTGCAGAAACTGACCATTCAGCCCATCAGCCTACTGGTCAGCATCCATGCCTCGCTGAAGCTCTACATCGCCTCAGATCACACCCCCTTGTCCTTCTCCCTGTTCGAGAGGGGGCTCCTTTACACCACTGGGCGGCAGCTCATCCATGCCCTGGCCATGCACTACGCAGCTGGAGCTCTCTTCAGGGCTGGCTGGGTGGTGGGATCTCTGGAGCTCTTGGGCAGCCCGGCGAGTCTGGTGCGGAGCATAGGCAATGGCATCGCAGACTTCTTCCGGCTGCCCTATGAGGGTCTGACCCGCGGCCCCGGGGCCTTCGTCAGTGGAGTGTCCCGAGGGACCACCTCCTTCGTCAAACACATTTCCAAAGGTACACCCACCGCTGCATCGGATCCACTCACACCTCACTCCAGCGGACAACAACGCACTCCTCCTCGACTGGAGCAGCTACATCATCTGCTGCAATCATTCTTTTCTGACTTTGACGTTGAGCTTGGCTGGGTGCTTAATGCTCAATTCCAAGccaaagtaaataataacagctCGGCAATTCTAAAGCCTGCTTTCTCACGATTCTCCCTAGTAATTTGTACCTTGACATCCATCACTAACCTGGCCACCAGCCTGGCGAGGAACATGGATCGTCTGTCCTTGGATGAGGAGCACTACACCCGCCAGGAGGAGTGGAGAAGACAGCTGCCCGAGAGCCTCGGAGACGGGCTGAGACAGGGACTCTCTCGTCTGGGCATCAGCCTGCTGGGTGCCATCGCTGGTATTGTGGATCAGCCAATGCAAAACTTCCAGAAGAACTGGGAGACACAGGGCTCTGCTGGGAGCAAAGCGAAGGGCGTAATCTCAGGAGTAGGCAAGGGCATCGTGGGTGTCTTCACCAAGCCAATCGGGGGCGCTGCTGAGCTCggATTCTGCATGGGGCCGGTCTTTGCCAGCTTCCCAAACAGCTCTATCTTCCCACCGAAGTGCAGTCAGCTCAGGCTCCCAACAGCCACGTCAAATATGAAGATGCTCCAGTCGCTGGGGCGGCCGGAGGTGCATATGGCTCTGGAGGTGACCATTGTGAGCGGCTCTGGCCAGGAGCACCCAGGCTGCCTGCTGCTGACCTCTGAGGTGCTGTTTGTGGTCAGCCTGAGCGAGGACACTCAGCAGCAGGCCTTCCCCGTCACTGAGATCGAATCCCAGCAGGAGCAGGGCGGCCCGCTCACTGTCACCCTGCGGCAGCAGCGCGTGGCCTGCGACTCTGAGGGCGAAAGCACCAGAGAGCGGCTGTCAGAGCTGCAGTACAAGCGCCTGGTGGAGTACGTGACTCGCACCTCCTCCCACATCGTGCCATCCAGCGCcaccctgcagcagcagcagccgccacAGGTGGTGGCAGCCGAGCCCCCCTTGGCCAGTGTCAAGACCTACAGATACCTGGTGGAGCCTCACTTTGCCCGTGTGTTTGTGAGCAAGTTCACTATGGTGAAAAACAAAGCCTTGAGAATAGGGTTCCACTGA

Function

GO: NA

KEGG:

id description
K19526 VPS13B; vacuolar protein sorting-associated protein 13B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156777 lncRNA downstream 35516 25610117 ~ 25612297 (-) True G125075
TU156717 lncRNA downstream 193815 25451215 ~ 25453998 (-) True G125035
TU156720 lncRNA downstream 214085 25374880 ~ 25433728 (-) True G125036
TU156719 lncRNA downstream 214085 25417951 ~ 25433728 (-) False G125036
TU156721 lncRNA downstream 214085 25431641 ~ 25433728 (-) False G125036
TU156879 lncRNA upstream 449904 26126554 ~ 26130462 (-) True G125160
TU156899 lncRNA upstream 528242 26204892 ~ 26205871 (-) True G125178
TU156922 lncRNA upstream 565604 26242254 ~ 26242531 (-) True G125200
TU156942 lncRNA upstream 598819 26275469 ~ 26279621 (-) True AMCG00002682
TU157020 lncRNA upstream 819299 26495949 ~ 26498450 (-) True G125269
AMCG00002666 mRNA downstream 36319 25604167 ~ 25611494 (-) True AMCG00002666
AMCG00002665 mRNA downstream 44763 25573833 ~ 25603050 (-) True AMCG00002665
AMCG00002660 mRNA downstream 313151 25299701 ~ 25334662 (-) True AMCG00002660
AMCG00002653 mRNA downstream 681404 24963795 ~ 24966409 (-) True AMCG00002653
AMCG00002655 mRNA downstream 714062 24921106 ~ 24933751 (-) True AMCG00002655
AMCG00002670 mRNA upstream 69433 25746083 ~ 25752614 (-) True AMCG00002670
AMCG00002674 mRNA upstream 111733 25788383 ~ 25822702 (-) True AMCG00002674
AMCG00002672 mRNA upstream 259552 25936202 ~ 25989563 (-) True AMCG00002672
AMCG00002673 mRNA upstream 326165 26002815 ~ 26005357 (-) True AMCG00002673
AMCG00002681 mRNA upstream 460307 26136957 ~ 26138496 (-) True AMCG00002681
TU156479 other downstream 1308247 24291787 ~ 24339566 (-) True G124848
TU156457 other downstream 1385990 24261565 ~ 24261823 (-) True G124829
TU156342 other downstream 2462645 23181921 ~ 23185168 (-) True AMCG00002629
TU156333 other downstream 2494649 23085994 ~ 23153164 (-) True G124719
TU155250 other downstream 7658348 17922452 ~ 17989465 (-) True G123829
TU156949 other upstream 627232 26303882 ~ 26305923 (-) False AMCG00002688
TU157116 other upstream 1178243 26854893 ~ 26875246 (-) True AMCG00002705

Expression Profile