RNA id: AMCG00002672


Basic Information

Item Value
RNA id AMCG00002672
length 2349
RNA type mRNA
GC content 0.50
exon number 15
gene id AMCG00002672
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 25936202 ~ 25989563 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTGGAATCTTATGTTACTCCACTTCTGATGAGCTATGTTGACCGCTATATCAAGAACCTAAAGCCATCAGATCTGCAGCTCTCGCTGTGGGGGGGGGATGTGGTTCTGAGCAAACTAGAGCTGAAGCTGGATGTCTTGGAGCAGGAATTGAAGTTGCCTTTCACTTTCCTGAGTGGGCACATTCATGAGCTGCGTATCCATGTGCCATGGACCAAACTGGGGTCTGAGCCTGTGGTCATCACAATCAACACCATGGAGTGCATCTTAAAACTGAAGGATGGAGCTCAGGACGACCATGAAAGCTGTGGCTCCAGCTCAACCAGCCGCAGCGCCACAGAGAGTGTTAAATCATTAGCCAAGCCACGGCGCATCCATCAGGCAGCCCCCAGCGACCCTGACTTACCACCGGGTTATGTTCAAAGCCTCATAAGACGTGTGGTCAATAATGTCAACATTGTTGTCAACAACCTCATCTTGAAGTATGTGGAAGATGACATTGTGCTATCTGTGAACATCACATCAGCGGAATGCTACACTGTAGATGAATTCTGGGATCGGGCTTTCATGGATATCTCGGCTCCTGATCTCGTCCTGAGGAAGGTCATTAATTTCTCTGACTGCACTGTTTGCCTTGATAAGCGCAATGCAAGTGGGAAGATTGAATTCTACCAGGATCCTTTGCTCTATAAGTGCTCCTTTCGAACTCGGCTGCACTTCACTTATGATAACATCAACTCCAAGATACCCTCTGTCATTAAAATTCAGACACTGGTGGAGAGTCTCAAGCTTTCTATTACAGACCAGCAGCTCCCCATGTTCATACGCATAATGGAATTGGGTATCGCTCTTTATTATGGGGAAATAGGCACTCAGAAGGAGGGAGAAACTGAGGAGATGTGCAGCCATTCCAGGGAAACTGTGGTCAACATCACTGGGGTGGAGAGCGAGGCAGATGTCCAGTCCCTACACACTGGTCAGTACCAGAACCCTGAGCTGTACCTACAGCAGGGCAACGAGGAGGATAACCAAAGCTGGGTGTCCTGGGCCTGGTCCTTTGTCCCAGCCATCGTCAGCACTGGGGAGGATGACCAGGAGGAAGGGCTGTACTATCCGCAAACTGAAGAGGATGGCCAAACACGCAGCCCCAGACATCACACCCCTAAGGACCCCATAGTCTCCATTGGCTTCTACTGCACCAAGGCCTCTGTCACCTTCAAGCTCACAGAAATGCAAGCCGAAAGCAGTTACTACAGTCCTCAGAAGGTGAAGTCCAGGGAAGTTCTGTGTTTGGAGCAGGAGGGAATTACTATAGAGGTGCTCATGATGGGAGAACCATTTTTTGACTGTCAGATTGGTTTTGTGGGCTGCCGGGCCTTGTGCCTAAAGGGAATCATGGGGGTGAAAGATTTTGAGGAGAACATGAACCGATGTGAGGAGGATGCCATCTTCTTCACCTGTGGGGAGAACCTGAGCAGTAAAGGAATGACATATCTCACCAACTCTTTGTTTGATTACCGGAGCCCAGAGAACAATGGTGTTCGAGCAGAGTTCATTTTGGACGCAAATCATCACAAGGAGACGTACACAGAGATAGCTGGCATGCAGCGCTTTGGTGCTTTCTACATGGATTACCTGTACACAATGGAGAACAACAGCGGCAaagACACAGGAGGTCAGCAGGAGTTCTCGGTCATGAATAAAGAGGACGACCCCACTGGTGTCCAGGAGACGTCAGTGAAGAGACTGGTAGTGGGGCCCCTGGACATCCGTCTCCATAGCAGTGCAGTCCACAGGATCCTCAAAATGGTGGCCTGTGGACTTGACCATGAATATGAGCCTTACAGCAGCCCAAAGCCAGATACTATTGATGACGACAGAGTGCTGCCAAGTCCTGAAGAAGTGGTTGCTTTAGAAGAGTTCATCCCCACTCGCCTAACTTGCGTCACTGTGATCAAAATTGCCATCACCATCCCCATGGCAGAGTTCAACCTGCTGGATTCTCTGCTGCCTGTAATTCTGGGCCAGAAGACCTTCACTACTCCTATGAATGTACCAGTGTTCCAGCAAGTGAGGCCTCTGCCTGCCATCAGGTTCCAAGTGGACAAAGTGAATCTGGAGCACTCGGTGCCAATGTATGCCCCCGAGCTGGTCAGCACTGTGAGCAGCTTGAGCCAGCCCTCTGACAACCTGCTTCACCACTGCTATGCTCACTGCTACCTGAAGGTGTTTGGTTTTCAGGCTGGGCTGACCTGCTTGGGTAGCGATGGATCATTTTTGCCCCTCTTTCCCATTGTGCCCTCCTTCAGCACTGCTCTTTATGCCAAACTTCTCAGGCATCCTGTGTAT

Function

GO: NA

KEGG:

id description
K19526 VPS13B; vacuolar protein sorting-associated protein 13B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156777 lncRNA downstream 323905 25610117 ~ 25612297 (-) True G125075
TU156717 lncRNA downstream 482204 25451215 ~ 25453998 (-) True G125035
TU156720 lncRNA downstream 502474 25374880 ~ 25433728 (-) True G125036
TU156879 lncRNA upstream 136991 26126554 ~ 26130462 (-) True G125160
TU156899 lncRNA upstream 215329 26204892 ~ 26205871 (-) True G125178
TU156922 lncRNA upstream 252691 26242254 ~ 26242531 (-) True G125200
TU156942 lncRNA upstream 285906 26275469 ~ 26279621 (-) True AMCG00002682
TU157020 lncRNA upstream 506386 26495949 ~ 26498450 (-) True G125269
AMCG00002674 mRNA downstream 113500 25788383 ~ 25822702 (-) True AMCG00002674
AMCG00002670 mRNA downstream 183588 25746083 ~ 25752614 (-) True AMCG00002670
AMCG00002671 mRNA downstream 259552 25647813 ~ 25676650 (-) True AMCG00002671
AMCG00002666 mRNA downstream 324708 25604167 ~ 25611494 (-) True AMCG00002666
AMCG00002665 mRNA downstream 333152 25573833 ~ 25603050 (-) True AMCG00002665
AMCG00002673 mRNA upstream 13252 26002815 ~ 26005357 (-) True AMCG00002673
AMCG00002681 mRNA upstream 147394 26136957 ~ 26138496 (-) True AMCG00002681
AMCG00002680 mRNA upstream 218707 26208270 ~ 26234043 (-) True AMCG00002680
AMCG00002679 mRNA upstream 253124 26242687 ~ 26260306 (-) True AMCG00002679
AMCG00002682 mRNA upstream 277489 26267052 ~ 26275651 (-) False AMCG00002682
TU156479 other downstream 1596636 24291787 ~ 24339566 (-) True G124848
TU156457 other downstream 1674379 24261565 ~ 24261823 (-) True G124829
TU156342 other downstream 2751034 23181921 ~ 23185168 (-) True AMCG00002629
TU156333 other downstream 2783038 23085994 ~ 23153164 (-) True G124719
TU155250 other downstream 7946737 17922452 ~ 17989465 (-) True G123829
TU156949 other upstream 314319 26303882 ~ 26305923 (-) False AMCG00002688
TU157116 other upstream 865330 26854893 ~ 26875246 (-) True AMCG00002705

Expression Profile