RNA id: AMCG00002673


Basic Information

Item Value
RNA id AMCG00002673
length 1195
RNA type mRNA
GC content 0.47
exon number 3
gene id AMCG00002673
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 26002815 ~ 26005357 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAAGCAAAGCGCTGCCCGCACCTATTCCTCTGCACCCTTCCCTCCAGCTGACCAACTACTCCTTCCTCCAGGCTGTCAATACCTTCCCAGCGGCTGTCGATCATCTGCAAGGCTTGTACGGACTCAGCGCGGTGCAGACAATGCACATGAACCACTGGACACTGGGCTACCCTAATGTACAAGGGCTGAGGTCTACCATCACAGAGATGGCTGCAGCCCAGGGCTTGGTGGACGCTAGGTTTTCTTTTCCAGGTTTACCGTTCGCTGCCCATCTTTTCCATCCGAAGCAAGGTGCGATTGCGCACGTTATCCCAGCTCTTCACAAGGACAGGCCGAGGTTTGACTTCGCCAACCTGGCCATCGCTGCCACCCAGGAGGACCCGCCGAAATCAGCAGACCTTTCCAAGTTGACTACGGGCCTCGGGAGCCCCATTTCAGAGCTGAACAAGTTGTCCCCAGACAGGAAACCCACCAGAGGACGACTCCCCTCGAAGACTAAAAAGGAATTTATTTGCAAGTTTTGTGGCAGGCATTTCACCAAGTCATACAACCTTCTCATCCACGAAAGAACCCACACCGACGAGCGGCCCTACACGCGTTTAGAAGACAAGATCATCTTAGGGACCACAGACATCAAGCCCTACAGCTGTGACCAGTGTGGAAAGGTGTTTCGGCGCAACTGTGACCTGCGACGGCACAGCTTGACACACACTCCACCACAGGACTACTAACAGCTAGCCGTGGAGGCAATTCTGCTtataaaccaaacaaagcaaaaagcaagaaagcaggacaaaataaaacaacaaaaccacagaCTTTACCGATATGCCAACGGACTATAATAAGGATAATCAATATCCCCTAATGGATTGGTTGACTCGGAATTCCACCGTGGAACAGAATTGTCTTCCTCACTCGTGTAAATACCgtgtaaataatgtttttgtactGTCCCTTtttataacaaaaatgtaaaatgtaatttggaaatatgttaaaatgtattttagaaataaagcaaatttaCTATTCGCATTTTATGGTCATTGTTTTTGTCCTTGTGGTTGAACGGGACGCAACTGGTAAAGACTCCgatatgatttattttacacaaactgggggattaaaatgaaacaccCCTTGTGCGAAGAATCACAAATAGAAATCGTATACAATGACACTGACaag

Function

GO: NA

KEGG:

id description
K09215 OSR, ODD; odd-skipped

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156777 lncRNA downstream 390518 25610117 ~ 25612297 (-) True G125075
TU156717 lncRNA downstream 548817 25451215 ~ 25453998 (-) True G125035
TU156720 lncRNA downstream 569087 25374880 ~ 25433728 (-) True G125036
TU156879 lncRNA upstream 121197 26126554 ~ 26130462 (-) True G125160
TU156899 lncRNA upstream 199535 26204892 ~ 26205871 (-) True G125178
TU156922 lncRNA upstream 236897 26242254 ~ 26242531 (-) True G125200
TU156942 lncRNA upstream 270112 26275469 ~ 26279621 (-) True AMCG00002682
TU157020 lncRNA upstream 490592 26495949 ~ 26498450 (-) True G125269
AMCG00002672 mRNA downstream 13252 25936202 ~ 25989563 (-) True AMCG00002672
AMCG00002674 mRNA downstream 180113 25788383 ~ 25822702 (-) True AMCG00002674
AMCG00002670 mRNA downstream 250201 25746083 ~ 25752614 (-) True AMCG00002670
AMCG00002671 mRNA downstream 326165 25647813 ~ 25676650 (-) True AMCG00002671
AMCG00002666 mRNA downstream 391321 25604167 ~ 25611494 (-) True AMCG00002666
AMCG00002681 mRNA upstream 131600 26136957 ~ 26138496 (-) True AMCG00002681
AMCG00002680 mRNA upstream 202913 26208270 ~ 26234043 (-) True AMCG00002680
AMCG00002679 mRNA upstream 237330 26242687 ~ 26260306 (-) True AMCG00002679
AMCG00002682 mRNA upstream 261695 26267052 ~ 26275651 (-) False AMCG00002682
AMCG00002688 mRNA upstream 277983 26283340 ~ 26305661 (-) True AMCG00002688
TU156479 other downstream 1663249 24291787 ~ 24339566 (-) True G124848
TU156457 other downstream 1740992 24261565 ~ 24261823 (-) True G124829
TU156342 other downstream 2817647 23181921 ~ 23185168 (-) True AMCG00002629
TU156333 other downstream 2849651 23085994 ~ 23153164 (-) True G124719
TU155250 other downstream 8013350 17922452 ~ 17989465 (-) True G123829
TU156949 other upstream 298525 26303882 ~ 26305923 (-) False AMCG00002688
TU157116 other upstream 849536 26854893 ~ 26875246 (-) True AMCG00002705

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU129986 True 760 lncRNA 0.38 2 CI01000020 6913454 ~ 6914288 (+)
grasscarp (Ctenopharyngodon idella) CI01000083_00069763_00073477.mRNA True 1037 mRNA 0.55 4 CI01000083 69763 ~ 73581 (+)
rainbow trout (Oncorhynchus mykiss) TU129986 True 783 lncRNA 0.49 2 NC_048566.1 12301209 ~ 12307847 (+)
eurasian perch (Perca fluviatilis) TU93283 False 804 TUCP 0.58 2 NC_053118.1 729924 ~ 732748 (-)
eurasian perch (Perca fluviatilis) TU129986 True 240 lncRNA 0.35 1 NC_053120.1 18659642 ~ 18659881 (+)