RNA id: AMCG00002674


Basic Information

Item Value
RNA id AMCG00002674
length 1590
RNA type mRNA
GC content 0.55
exon number 9
gene id AMCG00002674
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 25788383 ~ 25822702 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAAGTCATGCCCAGAACTTCAGAGTCCTGGTCCAGCTCGGAAGAAAAAATGAAGGAGTTCATCGGGCTTGTCTGGGATGCCGTGAAGCGCCTCACCCTGCAGttgGAGCTGCAatcctgttgtgtgtttttccctaATGACAGCCTGCCTTCACCCAGCACCATAGTGTCTGGTGACATTCCTGGGACTGTGCGAAGCTGGTACCACAATCAGGCCAGCATGCCTGGGACCCTAGTTGTGTGCCTTCCCCAAATAAGCGTTATGAGTGCTGGCCATAAGTACATGGAGCCACTTCAGGAAATTCCATTTGTTGTATCCAGACCAGTTCTTGAAGAAGGCGATGCATTTCCATGGACAGTGAGCGTGGGCCAGTTCAGTGTGTACACGCTCCTGGGACAGCAGCGCTCCTTCAGTCTGCTGGAGCCCATGGGCTGCACCTCCACTCTGGCTGTCACCTCACACAAGCTGCAGGCCTCAGCACCTGATGCCAGACACTCCTTCATCGTCTGTCTCCATGTCCAGTTGCTGTACGAGCTGTTTCATAGCTGGAGTACAACGTGGAGCAGGATCCAGAAGAGAGGCATCCTGCGCCAGGCCTCAGGCTTTCCTGAACCGCCCATGGGGGCTGCCCCTTCCTCCCCTGTGCGGAGCAGCGCTGGCACTGCGCTCCCTGACACGAGCACCTGCAGCCCCTCTGCTGACTTCGGCTCCCCCACTGAGGGGGATTCTTTGCAAACCGTGGATGACTCCCCTTTCTCAGACGCCGTTACCCTCGAGCAAAAGACCAGCAATATTGGCGGAGCAAGTGGCAGAGTCAGTCTGTGGATGCAGTGGATGTTACCAAAAGTCACAATGAAGCTGTTCGCACCAGATCCTGCCACAAAGGGAACCGAGATCTGTGTGATCAGCGAACTGGAAGATCTCAGTGCCTCTGTTGATGTTCAAGACGTTTACACCAAGATCAAGTGTAAAGTGGGAAGCTTCAACATTGATCACTACAAAAGCAGGCCAGGTGAAGGCTGGCAGACAGGACATTTTGAAGGAGTGATTCTTCAGTGCAAGGAAAAACCAGTGACTGCTGCCAAAGTTTTAGAAGTGTCCCACCAACAACATGGCTTCCTGTCAATCACATACACCCAGGCCGTCACTAAGAATGTGCGGCACAAGCTGACCTCCAGGCAGGAGCGTTGCTCACGGGGCCTGCAGAGGCTGTCCGAGGGCCTGGTGGACAGCTCCCCTCAGTACCTGCGGGAGATCCTGCTCACTGCCCAGCCCTTCGACGTGGTGCTCTCCTGCCCACTGCTCACCACTGTGGCTGGAGTCTTCCAGGCCAAGCTCCCCAAGAGGCACAGGGACAAGGGCAAGTCAGGGGGGCAACCCATGAGAACTCACACCCTGACCTCCCGTAGTCTCCCCCTCATCTACATCAACACCAGTGTCATTCGTGTCTTCTGTCCCAACACGCAGTACACCACAGaatgCCACCTGAAGAAGGAAGACACTCTAGTGCTTAAGATTGGCTCTGTCAGCATGGCTCCGCAGGCTGATAACCCCTTGAGTAGAACCGCCCTGCGCAAAGACATTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156777 lncRNA downstream 176086 25610117 ~ 25612297 (-) True G125075
TU156717 lncRNA downstream 334385 25451215 ~ 25453998 (-) True G125035
TU156720 lncRNA downstream 354655 25374880 ~ 25433728 (-) True G125036
TU156879 lncRNA upstream 303852 26126554 ~ 26130462 (-) True G125160
TU156899 lncRNA upstream 382190 26204892 ~ 26205871 (-) True G125178
TU156922 lncRNA upstream 419552 26242254 ~ 26242531 (-) True G125200
TU156942 lncRNA upstream 452767 26275469 ~ 26279621 (-) True AMCG00002682
TU157020 lncRNA upstream 673247 26495949 ~ 26498450 (-) True G125269
AMCG00002670 mRNA downstream 35769 25746083 ~ 25752614 (-) True AMCG00002670
AMCG00002671 mRNA downstream 111733 25647813 ~ 25676650 (-) True AMCG00002671
AMCG00002666 mRNA downstream 176889 25604167 ~ 25611494 (-) True AMCG00002666
AMCG00002665 mRNA downstream 185333 25573833 ~ 25603050 (-) True AMCG00002665
AMCG00002660 mRNA downstream 453721 25299701 ~ 25334662 (-) True AMCG00002660
AMCG00002672 mRNA upstream 113500 25936202 ~ 25989563 (-) True AMCG00002672
AMCG00002673 mRNA upstream 180113 26002815 ~ 26005357 (-) True AMCG00002673
AMCG00002681 mRNA upstream 314255 26136957 ~ 26138496 (-) True AMCG00002681
AMCG00002680 mRNA upstream 385568 26208270 ~ 26234043 (-) True AMCG00002680
AMCG00002679 mRNA upstream 419985 26242687 ~ 26260306 (-) True AMCG00002679
TU156479 other downstream 1448817 24291787 ~ 24339566 (-) True G124848
TU156457 other downstream 1526560 24261565 ~ 24261823 (-) True G124829
TU156342 other downstream 2603215 23181921 ~ 23185168 (-) True AMCG00002629
TU156333 other downstream 2635219 23085994 ~ 23153164 (-) True G124719
TU155250 other downstream 7798918 17922452 ~ 17989465 (-) True G123829
TU156949 other upstream 481180 26303882 ~ 26305923 (-) False AMCG00002688
TU157116 other upstream 1032191 26854893 ~ 26875246 (-) True AMCG00002705

Expression Profile