RNA id: AMCG00002681


Basic Information

Item Value
RNA id AMCG00002681
length 873
RNA type mRNA
GC content 0.48
exon number 3
gene id AMCG00002681
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 26136957 ~ 26138496 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGATGCCAGTCCAAGGAATCTATACTGGAGCTGTGCGACGATTACGACGACACCGAGAAGGAGTTTTACTTTGACAGAAACCCTGCACTTTTCCCTTACGTGTTAAATTTTTACAACACTGGCAGGTTGCACGTCATGGCAGAGTTGTGCATTTTCTCCTTCAGTCAAGAAATAGAATATTGGGGCATCAACGAATTCTTCATTGACTCTTGTTGCAGCAATATCTATCACTGCCGGAAAATGGAACCAGTCCAAGACGACTGGGAGGACAAAAGCGAGGAAGAAAGCACCACGTCTTCTTTTGATGAGATTTTGGAGTTCTACAATGACGCAACAAAGTTTGACAAGCAGCCACTGGGAAGCATGAGGAGGAGGATTTGGTTGATGCTTGATAACCCTGGGTATTCAATCCCTAGCAGGATATTCAGTGTACTTTCAATCCTTGTAGTCCTGGGTTCTATTGCCACCATGTACCTTATGTCAATCCTGCCTTTTTACCTGACACTCATTATTAACTTGGTGGTGGAGAGCAGCCCCACACTGGCCAATCTTGGACGGGTGGCCCAAGTGCTGAGGTTGATGAGAATCTTTCGGATCTTGAAGCTCGCCCGCCACTCAACTGGGCTCCGGTCCCTGGGAGCCACCCTAAAGAACAGCTACAAAGAGGTGGGCCTCCTGCTGCTTTATCTGTCAGTTGGGGTCTCTTTCTTCTCTGTGATGGCCTACACCATTGAGAAGGAAGATAACGAGGGGCTGACTACTATTCCTGCCTGCTGGTGGTGGGCGACAGTCAGTATGACCACAGTGGGTTATGGAGACGTGGTCCCTGGAACCATAGCAGTGCATGAGGAGCTTTATGTTGTCCGGTAG

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0016020 membrane cellular_component
GO:0005216 ion channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156879 lncRNA downstream 6495 26126554 ~ 26130462 (-) True G125160
TU156777 lncRNA downstream 524660 25610117 ~ 25612297 (-) True G125075
TU156717 lncRNA downstream 682959 25451215 ~ 25453998 (-) True G125035
TU156720 lncRNA downstream 703229 25374880 ~ 25433728 (-) True G125036
TU156899 lncRNA upstream 66396 26204892 ~ 26205871 (-) True G125178
TU156922 lncRNA upstream 103758 26242254 ~ 26242531 (-) True G125200
TU156942 lncRNA upstream 136973 26275469 ~ 26279621 (-) True AMCG00002682
TU157020 lncRNA upstream 357453 26495949 ~ 26498450 (-) True G125269
TU157043 lncRNA upstream 515714 26654210 ~ 26654689 (-) True AMCG00002694
AMCG00002673 mRNA downstream 131600 26002815 ~ 26005357 (-) True AMCG00002673
AMCG00002672 mRNA downstream 147394 25936202 ~ 25989563 (-) True AMCG00002672
AMCG00002674 mRNA downstream 314255 25788383 ~ 25822702 (-) True AMCG00002674
AMCG00002670 mRNA downstream 384343 25746083 ~ 25752614 (-) True AMCG00002670
AMCG00002671 mRNA downstream 460307 25647813 ~ 25676650 (-) True AMCG00002671
AMCG00002680 mRNA upstream 69774 26208270 ~ 26234043 (-) True AMCG00002680
AMCG00002679 mRNA upstream 104191 26242687 ~ 26260306 (-) True AMCG00002679
AMCG00002682 mRNA upstream 128556 26267052 ~ 26275651 (-) False AMCG00002682
AMCG00002688 mRNA upstream 144844 26283340 ~ 26305661 (-) True AMCG00002688
AMCG00002689 mRNA upstream 179847 26318343 ~ 26319376 (-) True AMCG00002689
TU156479 other downstream 1797391 24291787 ~ 24339566 (-) True G124848
TU156457 other downstream 1875134 24261565 ~ 24261823 (-) True G124829
TU156342 other downstream 2951789 23181921 ~ 23185168 (-) True AMCG00002629
TU156333 other downstream 2983793 23085994 ~ 23153164 (-) True G124719
TU155250 other downstream 8147492 17922452 ~ 17989465 (-) True G123829
TU156949 other upstream 165386 26303882 ~ 26305923 (-) False AMCG00002688
TU157116 other upstream 716397 26854893 ~ 26875246 (-) True AMCG00002705

Expression Profile