RNA id: TU156942


Basic Information

Item Value
RNA id TU156942
length 1447
lncRNA type sense_over
GC content 0.39
exon number 4
gene id AMCG00002682
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 26267052 ~ 26279621 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAATTAGAATCTTTAGGGTGAACAAACTAATTGTATAAATCGAGACCTCTAGAACTTCTGAAAATGCACCATTTACTCAACTAAATCTGTATAtctgtaaatataatttgaaatacaacTCACGTTTACTTCCCAAAGAATCCGTGTCTTTACATGTAGGAAGGACTACTTTATACCATCACCTAAATCCAGAATTGGCATATGGCACATTAACAAACTGAACACCTGTATTCAGATTGAATACTGAAGAAAGCTTAGGTAAACCAGATCAACAAATCTGGAACTGGATTTTAAACTGGTTAAATTTAAGATTGAAGGCTTATCTAAAATGCAGTCTGGGCCCCAAGCTCCTGGTGAATTTCCATTTCTACAGGCTCTTGctagagattttaaaaatggattACCAGAAgtgacagaaatgcatttttttttttttttttatacaaaactTCTAATTCAcacaatttgattatttttttaataaggtCTACAATTTACTATATCTTTAAATGTCAGGATAGCAAGGaatttacttttgaaaaacTAGCATCTGTTTTGACCGTTTTAAATAGAATGCAACTATTTCAAACATCAGGTACACTGGTTTAGGCATATAAAccaatatattgaatatatatgcCAAATCCACAGACTTGTACACATGGCATAAAGTACCATAGCATATTAAAAATGACCACCACAAGTTGTTTTTCTCcactggatttatttataacaatttgGGAAAATGTGAATTTACTTCTCGCCCCCCTGCTGCTCTGGCATACTCCTGATGATGTCCGAGTCACCTGGTCAATGATGGCCAGTGTGCATACTCTGTAGTATTTACCACAGGCTGTGCCAAGTTCAATGTTATTTCCACTGTAATGGTGGACTCCAGTCTTGGCTAACATGGCGTAGTATTCAATTTCGgattttTCAGAGCAGGGCAGTTGTTGGCCAGGATGACCAGCTTGGCTTTGCCCTGACGGATCATCTTCAGTGTCTGTTTGTACCCAAGCACGTATTTACCACTTTTCATCACCAGCTGGAGCCGGGAGTTTATGGACTCCAGGGACTTTTTCCGTTTTCTTGGCGGCGACCATTTTCGCGGTTCACTCCGTTCTGGTCCAACCTAAACCAAACAAATGAGAGGTTAACATCTCATTTTCGAGAAACCCTGGTCTCACTATCtcgaattaaattaaattccaatgTAATTTATCACAAAATACGGAGCTCAACTTACCAGACTTGCAACTCAAAAATGGCCGCAGAGGGAAAGGAAAGACTTCCCAGCATGCAAAGCGCTTCTAAGAGATTTCGGCCATCCTCGCGAGAGGCGGTATGACAAAGAGGAAGCGAGTTCTtccgtgtgtgcgtgtgattgTGGGGAGCAAGTTAAGATCACTGCGCCAAATTCAGTTTCTTATGTGGTTCGAAATACGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156922 lncRNA downstream 32938 26242254 ~ 26242531 (-) True G125200
TU156899 lncRNA downstream 69598 26204892 ~ 26205871 (-) True G125178
TU156879 lncRNA downstream 145007 26126554 ~ 26130462 (-) True G125160
TU156777 lncRNA downstream 663172 25610117 ~ 25612297 (-) True G125075
TU156717 lncRNA downstream 821471 25451215 ~ 25453998 (-) True G125035
TU157020 lncRNA upstream 216328 26495949 ~ 26498450 (-) True G125269
TU157043 lncRNA upstream 374589 26654210 ~ 26654689 (-) True AMCG00002694
TU157045 lncRNA upstream 376007 26655628 ~ 26655871 (-) True G125291
TU157051 lncRNA upstream 382083 26661704 ~ 26663029 (-) True G125297
TU157134 lncRNA upstream 634086 26913707 ~ 26915965 (-) True G125361
AMCG00002679 mRNA downstream 15163 26242687 ~ 26260306 (-) True AMCG00002679
AMCG00002680 mRNA downstream 41426 26208270 ~ 26234043 (-) True AMCG00002680
AMCG00002681 mRNA downstream 136973 26136957 ~ 26138496 (-) True AMCG00002681
AMCG00002673 mRNA downstream 270112 26002815 ~ 26005357 (-) True AMCG00002673
AMCG00002672 mRNA downstream 285906 25936202 ~ 25989563 (-) True AMCG00002672
AMCG00002688 mRNA upstream 3719 26283340 ~ 26305661 (-) True AMCG00002688
AMCG00002689 mRNA upstream 38722 26318343 ~ 26319376 (-) True AMCG00002689
AMCG00002687 mRNA upstream 43277 26322898 ~ 26338157 (-) True AMCG00002687
AMCG00002690 mRNA upstream 84341 26363962 ~ 26375896 (-) True AMCG00002690
AMCG00002685 mRNA upstream 102890 26382511 ~ 26390982 (-) True AMCG00002685
TU156479 other downstream 1935903 24291787 ~ 24339566 (-) True G124848
TU156457 other downstream 2013646 24261565 ~ 24261823 (-) True G124829
TU156342 other downstream 3090301 23181921 ~ 23185168 (-) True AMCG00002629
TU156333 other downstream 3122305 23085994 ~ 23153164 (-) True G124719
TU155250 other downstream 8286004 17922452 ~ 17989465 (-) True G123829
TU156949 other upstream 24261 26303882 ~ 26305923 (-) False AMCG00002688
TU157116 other upstream 575272 26854893 ~ 26875246 (-) True AMCG00002705

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU264241 True 742 lncRNA 0.41 2 CI01000054 7007111 ~ 7009223 (+)
rainbow trout (Oncorhynchus mykiss) TU264241 True 1368 lncRNA 0.49 2 NC_048567.1 18227984 ~ 18229371 (-)