RNA id: AMCG00002685


Basic Information

Item Value
RNA id AMCG00002685
length 1517
RNA type mRNA
GC content 0.40
exon number 9
gene id AMCG00002685
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 26382511 ~ 26390982 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACACTGCAGCAGCTTCAGCTGGGCAGTTTTTACGAATATGCAACATCCCGGCACGCATTCGGGTTGCAAAGTTAACCGGAATGGGAGCCCAGAATATGAAGAAAGCAGGGCAGAAGGAGAAATTGAGCCTCTCctcagagaaaacccacaccgCTTTGTCATTTTCCCTATTCAGTATCCTGACATTTGGAAGATGTACAAGCAGGCTCAGGCCTCATTCTGGACTGTCGAAGAGGTTGATTTATCCAAGGACCTTGCTCACTGGGATAGGTTGAaaccagaagaaaaacattttatctcTCATGTCTTGGCTTTTTTTGCTGCCAGTGATGGAATTGTCAATGAGAACCTTGTACAGAGATTTAGCCAGGAGGTCCAGGTTCCTGAGGCTCGCTGCTTCTATGGCTTTCAGATTCTCATTGAGAATGTGCACTCAGAGATGTACAGCATGctcataaacacatacattaggGACTTAAAGGAAAGagaacatttgtttaatgcagTTCAGACCATGCcttgtgtgaaaaaaaaagcagactgGGCTTTACAGTGGATCTCTGACAACAAATCCACATTTGGTGAAAGGCTAGTGGCATTTGCTGCAGTAGAGGGAATATTTTTCTCTGGCTCTTTTGCTGCCATATATTGGTTGAAAAAGAGGGGTCTCATGCCTGGACTCACCTACTCTAATGAGCTTATCAGCAGAGATGAGGGACTGCACTGTAATTTTGCCTGCCTGATGTACAACAACCTTGTAAGGAAGTCTTCAGAGGAAAGAGTGAAAGAGATCATCACCAAAGCTGTCAGTATTGAGCAGGAGTTTCTAACGGAGGCTTTACCTGTGAAGCTGATTGGGATGAACTGCGCATTAATGAGGCAGTACATTGAGTTTGTTGCTGACCGGCTACTGACAGATCTGGGGTTGTCAAAGGTGTTTCAAGCAGAAAATCCTTTTGACTTCATGGAATCAATTTCCCTGGAGGGGAAAACCAATTTTTTTGAGAAGCGAGTGGCTGAGTACCAGCGGCTGGGAGTAATGTCAAACACAATGGACTGTCATTTTACATTGGACGCCGACTTTTAATATTTCCTTTgggtcatttttattattgtttatttatttttagtcttgattttgttattctgttcattgttactgtgttttatttttcttaataaaaatcACTGTAACATCACTTGGTTCCCTATTTCACATTTCTTCACATACAAAGCAGTTACATCTTCAAGAAGACCCTACAAATGCCTGGTAACATAATTATGAatgaacatttcaatataatGCAATGTTGGTACCATATGATGTCATTCACATTTTCCTTTGTCAGAGTtatgattcattattattattattccagtcACATTATTGTAAAGCGAGCAAAGTTgtacatacatttgtattatatttaaggACATTCTTGGACAAGGTATCTTACATGGTCAACTTGATTTTTAACCGTTTCAGTAAGGGTTGAATATTGTATGATGTACTTAGA

Function

GO: NA

KEGG:

id description
K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156942 lncRNA downstream 102890 26275469 ~ 26279621 (-) True AMCG00002682
TU156922 lncRNA downstream 139980 26242254 ~ 26242531 (-) True G125200
TU156899 lncRNA downstream 176640 26204892 ~ 26205871 (-) True G125178
TU156879 lncRNA downstream 252049 26126554 ~ 26130462 (-) True G125160
TU156777 lncRNA downstream 770214 25610117 ~ 25612297 (-) True G125075
TU157020 lncRNA upstream 104967 26495949 ~ 26498450 (-) True G125269
TU157043 lncRNA upstream 263228 26654210 ~ 26654689 (-) True AMCG00002694
TU157045 lncRNA upstream 264646 26655628 ~ 26655871 (-) True G125291
TU157051 lncRNA upstream 270722 26661704 ~ 26663029 (-) True G125297
TU157134 lncRNA upstream 522725 26913707 ~ 26915965 (-) True G125361
AMCG00002690 mRNA downstream 6615 26363962 ~ 26375896 (-) True AMCG00002690
AMCG00002687 mRNA downstream 44354 26322898 ~ 26338157 (-) True AMCG00002687
AMCG00002689 mRNA downstream 63135 26318343 ~ 26319376 (-) True AMCG00002689
AMCG00002688 mRNA downstream 76850 26283340 ~ 26305661 (-) True AMCG00002688
AMCG00002682 mRNA downstream 106860 26267052 ~ 26275651 (-) False AMCG00002682
AMCG00002686 mRNA upstream 4900 26395882 ~ 26452474 (-) True AMCG00002686
AMCG00002693 mRNA upstream 205149 26596131 ~ 26608752 (-) True AMCG00002693
AMCG00002694 mRNA upstream 222494 26613476 ~ 26664767 (-) False AMCG00002694
AMCG00002708 mRNA upstream 430983 26821965 ~ 26831030 (-) True AMCG00002708
AMCG00002705 mRNA upstream 466387 26857369 ~ 26875008 (-) False AMCG00002705
TU156949 other downstream 76588 26303882 ~ 26305923 (-) False AMCG00002688
TU156479 other downstream 2042945 24291787 ~ 24339566 (-) True G124848
TU156457 other downstream 2120688 24261565 ~ 24261823 (-) True G124829
TU156342 other downstream 3197343 23181921 ~ 23185168 (-) True AMCG00002629
TU156333 other downstream 3229347 23085994 ~ 23153164 (-) True G124719
TU157116 other upstream 463911 26854893 ~ 26875246 (-) True AMCG00002705

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00029423 True 1289 mRNA 0.43 9 NC_007130.7 32918131 ~ 32928470 (-)