RNA id: AMCG00002686


Basic Information

Item Value
RNA id AMCG00002686
length 8799
RNA type mRNA
GC content 0.50
exon number 57
gene id AMCG00002686
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 26395882 ~ 26452474 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGTTACGGGAGGTCTCGGAGAAACTCAACAAGTACAACTTCAACAGTCATCCCCCTCTGAATGTGTTGGAACAGGCCACAATTAAACAGTGTGTAGTGGGACCAAATCATGCTGCTTTTCTTCTGGAGgatGGTCGCATCTGTAGAATTGGTTTTGCTGTCCAACCTGACAGGCTGGAGTTGGGTAAACCAGATGGCAGTGATGGttcaaaGTTGAGCAGTGGTTCAGGGACAGGAAGGACCTCCAGGCCAGGCAGGACTAGTGATCCGCCCTGGTTTCTGTCTGGTTCTGACACACTGGGCAGACTGGCAGGCAACACCCTTGGGAGTCGCTGGAGTTCCGGCGTGAATGGGGGAGGCGGCGGAGGGggcagtggtggtggtggcggaGGCGGCTCATCTGGCAGATCCTCTACAGCAGCCAGAGACTCCCGGAGGCAGACAAGAGTGATCCGTACTGGACGGGACCGTGGCTCCGGGCTCTTGGGGAGCCAGCCTCAGCCGGTCATTCCAGCCTCGGTCATTCCTGAGGAACTCATCTCTCAGgcacAGGTAGTTCTTCAAGGAAAGTCCAGGAGTGTTATCATTCGAGAGCTCCAGCGGACTAACCTGGATGTTAATTTGGCTGTTAACAACTTGCTGAGTCGTGATGATGAAGATGGAGATGATGGTGATGACACTGCAAGTGAATCATACTTACCTGGGGAGGACTTGATGTCTCTCCTGGATGCTGACATCCATTCTGCACACCCCAGTGTCATCATTGATGCAGACGCTATGTTTTCTGAAGACATAAGCTATTTTGGATACCCCTCCTTTCGCCGTTCGTCTCTCTCAAGACTTGGCTCCTCACGAGAGAGAGACTCGGAGCTGTTGCGTGAGCGTGAGTCTGTGTTACGTTTGCGTGAGCGGAGGTGGCTTGATGGAGCCTCTTTTGATACTGAGCGAGGCTCCACAAGCAGGGAAGGGGAGCCCAGCCTGGACAAGAAGAATATCCCAGTGCAGAGCCCTGTATCATTGGCAGAGGAACTTCAGTGGTGGCCTGATAAGGATGGTACAAAGTTTGTTAGCATTGGGGCCTTGTTCTCTGAGTTGGTGGCAGTGAGTTCAAAGGGAGAGCTCTATCAGTGGAAGTGGAGTGAAGCTGAACCATATAGAAATGCACAGaaCCCTGCTGTACATCATCCAAGGGCCACTTTTCTAGGGTTGACCAATGAGAAAATCACCCTCCTATCTGCCAACAGTATTCGAGCTACTGTGGCCACTGAAAGCAACAAGgTTGCAACATGGGTGGATGATACACTCAGCACAGTAGCATCTAAATTGGAGCACAGCACCCAGACCTTCACAGAGCTGCAAGGAGAGCGCATTGTATCCTTGCACTGCTGTGCTCTGTACACCTGTGCACAACTAGAGAACAGCCTGTACTGGTGggGTGTTGTGCCTTTCAGTCAGCGAAAAAAGATGCTTGAAAAGGCCAGAGCCAAGAACAAAAAGCCAAAGTCCAGTGCAGGCATTTCCTCAATGCCCAACATTACGGTGGGAACCCAGgTCTGTCTGAGGAACAACCCTCTTTACCATGCTGGTGCGGTGGCCTTTTCCATTAACGCTGGCATTCCTAAAGTTGGTGTGCTGATGGAGTCAGTGTGGAATATGAACGATAGCTGCAGATTCCAGTTGAGGTCACCCGAGAGCTTGAAAAACATGGAGAAGACTAGCAAGACTGCAGAAACAAAAACAGAGAACAAACCTGAGTCTGTGAAGACTGAAATGGGACCTCCTCCTTCCCCAGCCTCCACTTGCAGTGATACATCCTCTATTGCAAGCAGTGCATCACTTCCTTACAAGCGGCGACGCTCAACCCCAGCCCCTAAAGAAGAGGAGAAAGTAAATGAAGAGCAGTGGCCTCTGAGAGAAGTGGTGTTTGTGGAAGATGTTAAAAATGTCCCTGTTGGAAAGGTGCTAAAAGTCGATGGTGCATATGTTGCTGTGAAATTTCCAGGAACATCCAGCAGTGTGAGCAACCAAAGCACAACTCCTTCTGACTCTGATCCATCCTCACTGCTGCAGGACTGTAGACTACTAAGAATAGATGAGCTCCAGGTTGTAAAAACTGGTGGCACTCCAAAGGTTCCAGATTGCTTCCAACGCACACCTAAGAAACTCTGCATCCCTGAAAAAGCTGAAATACTAGCTGTGAATGTTGATTCGAAAGGTGTGCATGCTGTACTGAAGACTGGTAGCTGGGTGCGATACTGTATCTTTGATCTGGCAACAGGCAAAGCGgaacaggaaaataattttCCTACCAGCAGCCTTGCCTTCCTTGGCCAGAATGAGCGGAATGTTGCCATTTTCACTGCAGGGCAGGAATCACCTATCATTCTGAGGGATGGAAATGGAACAATTTACCCAATGGCTAAAGACTGCATGGGTGGCATACGAGATCCGGACTGGTTAGATTTGCCACCCATCTCAAGCCTTGGTATGGGAGTTCATTCCCTAACTAACCTTCCTGCTAACTCCACCATTAAGAAGAAAGCCgccataataataatggctgTTGAaaagcAAACCTTAATGCAGCATATTCTGCGTTGTGACTTGGAAGCGTGCAGGCAATATCTCATTAACCTGGAGCAGGCTGTTCTGCTGGAGCAGACCCCTCAAGCCTTAAATACACTCCTTGGGCACAGGTGTGATGGGAACCGCAATATACTGCACACCTGCGTGTCTGTTTGCTTCCCCATCAGCaacaaagaaactaaagagGAAGAAGaagctGAGCGATCAGAGAGGAACACCTTCGCAGAGAGGCTGTCTGCAGTGGAGGCCATAGCCAATGCGATCTCTGTGGTTTCTAGCAACAGCTCTGGAAATAGAACAGGATCATCCAGTAGCAGGGGCCTGCGGCTGCGAGAGATGATGAGACGTTCCTTGAGAGCTGCTGGTTTGGGTCGTCACGAGTCCGGGCCCTCCTCCAGTGACCACCAGGACCCCGTTTCCCCACCCATTGCCCCACCCAGTTGGGTTCCAGACCCGCCTCCCATGGACCCAGATGGTGATATTGATTTTATCCTGGCTCCTGCTGTGGGCTCCCTTACCACTGCTTCCACTGGAACTGGCCAGGGACCCAGTACCTCCACCATACCAGGACCTTCATCTGAGCCGTCAGTAGTGGAGTCAAAAGATCGTAAAGCCAATGCCCATTTGATTCTGAAATTGATGTGTGATAGTGTTGTTCTTCGTCCCTATCTCCGGGAATTGCTTTCTGCAAAGGATGCAAGAGGAATGACACCATTCATGCTGGCTGTTAGTGGGAGAGCATATCCAGCTGCTATTACCATCCTTGAAGCAGCCCAAAAAATAACCAAAGGTGACCCAGCTTCCAGCGAAAAGGAGGATGCCGTATTCATGGAAATGATCTGCCCATCTGGAACCAACCCAGATGACTCTCCTCTTTATGTTCTTTGCTGTAACGACACCTGCAGTTTCACATGGACTGGAGCTGAACACATTAATCAGGATATTTTCGAGTGCCGAACATGTGGCTTGTTGGAATCTCTCTGCTGCTGCACAGAGTGTGCCAGAGTTTGCCACAAGGGGCATGACTGCAAattgaaGAGAACATCTCCTACTGCGTACTGTGACTGCTGGGAGAAGTGCAAATGTAAAACCCTGATTGCTGGACAGAAATCGGCCCGTCTTGACCTGCTCTACAGACTTCTCACCACCACTAACCTTGTCACCATGCCAAACAGCAGGCAAGTACATAGCAGACACTTTGCAGGAGAGCATCTCTTATTGTTCTTGGTGCAGACGGTTGCCAGGCAGACTGTGGAACACTGCCAGTATCGGCCTCCAAGGATCAGAGAGGATAGAAACCGCAAGGCTGCAAATGCTGATGATTCAGACATGCCAGATCATGACCTGGAGCCACCCCGATTTGCCCAGCTGGCCCTGGAGCGTGTGCTGCAGGATTGGAATGCCCTCAAATCCATGATCATGTTTGGATCTCAGGAGAACAAAGACCCGCTTAGTGCGAGCAGCAGAATAGGTCACCTTCTTCCAGAAGAGCAGGTGTATCTGAACCAGCAGAGTGGAACAATCCGACTGGACTGCTTTACCCACTGTCTAATTGTGAAGTGCACTTCAGACATAACTctTTTAGATACGCTTTTGGGAACTCTGGTGAAAGAGCTTCAAAATAAGTACACTCCAGGTCgaagagaggaggccattaacGTCACTATGAGGTTCCTGCGCTCTGTGGCCAGGGTGTTTGTCATTCTCAGTGTGGAGATGGCTTcatcaaagaagaaaaataacTTTATACCCCAACCTATAGGGAAGTGCAAGCGTGTATTCCAGGCCTTGTTACCATATGCTGTGGAGGAATTGTGTAATGTGGCTGAATCGTTGATAGTTCCAGTGCGCATGGGCATTGCCCGCCCCACTGCTCCCTTCACCTTGGCTAGTACCAGCATTGATGCTATGCAGGGCAGTGAGGAGCTCTTCTCTGTCGAGCCACTGCCACCCAGACCCTCACCAGACCAATCCAGCAGCTCCAGCCAGTCTCAATCTTCATACATCATGAGGAACCCTCAGCAGAGGCGCATCAGCCAGTCACAGCCGGTCCGCGGGAGAGATGAAGAGCAGGATGATATCGTCTCTGCAGATGTTGAGGAGgtggaggtggtggagggggtggcAGGGGAAGAGGATCATCATGATGAGCAGGAGGAACAGGGGGAGGAGAATGCTGAGGCTGAGGGACAACATGATGAACACGATGAAGATGGCAGTGACATGGAACTTGATTTACTGGCAGCTGCAGAAACAGAAAGTGACAGTGAAAGCAACCATAGCAACCAGGACAATGCCAGTGGTCGAAGGAGTGTTGTCACAGCGGCTACTGCTGGCTCTGAAGCAGGTGCCAGCAGTGTCCCTGCCTTCTTTTCAGAGGACGACTCTCAGTCCAACGACTCGAGTGACTCGGACAGCAGCAGTAGCCAGAGTGATGATGTGGACCAGGAGACCTTCATGGTGGATGAGCCCCTGGAGAGGACCACCAGCACCTCCCATGCCAACAGCGCTGCCCAAGCCCCGCGCTCCATGCAACTAACAATTAGTCTCCcctctgtttgttttatctttgcAGCCAGCTCAACAGGGTTGATTTACATTGACCCCTCAAACCTGCGGAGAAGTGGTGCCATTAGTACCAGtgcagctgctgctgccgcAGCCCTGGAGGCCAGCAACTCTAGCAGCTACCTGACCTCAGCCAGCAGCTTGGCCAGGGCCTACAGCATTGTCATCCGTCAGATCTCTGACCTCATGGGCCTCATCCCTAAATACAACCACCTTGTATACTCCCAGATCCCTGCCGCTGTCAAACTCACCTACCAGGATGCTGTCAACCTACAGAACTATGTGGAAGAGAAGTTAATCCCCACATGGAACTGGATGGTGAGCATCATGGACTCCACTGAGGCTCAGCTGCGCTATGGCTCTGCATTACGTGCTGCCACTTTGCTTAGTGCTCGCCAGGGGATGATGTCAGCACGTGGAGACTTCCTAAATTACGCCCTATCTCTTATGCGCTCTCACAACGACGAACACTCTGATGTCCTGCCAGTGTTGGATGTTTGCTCTCTCAAGCATGTAGCCTATGTCTTCCAAGCACTTATTTATTGGATCAAGGCAATGAACCAACAGACCACACTGGACACGCCTCAGCTGGAGAGAAAGAGAACTCGTGAGCTGTTAGAGCTGGGACTGGACAATGAAGACTCGGAGCATGAAAATGATGAGGACACCAATCAGAGCTCCACTCTCCACGACAAAGATGAGGAAGCGGTCCCAGCAGAAACGGGCCAGAACCACCCCTTCTTCCGCCGCTCTGACTCCATGACTTTTCTGGGCTGCATCCCTCCAAACCCATTTGAAGTGCCCCTGGCAGAAGCCATCCCATTGGCTGACCAGCCTCACCTGTTACAGCCAAATGCAAGAAAGGAAGACCTTTTTGGACGCCCAAGTCAGGGTCTTTATTCCTCCTCATACAACACGGGCAAAGGACTTGCAGAAGTTACTGTGGACAGAAACTGTCTTGagGTTCTGCCTACTAAAATGTCTTACTCTGCGAACATGAAGAATGTGATGAGCATGCAGACTCGACAAAAGACTAGTGAGGAGCAGACTCTGCCTGAGGAAGAGCCTGAAAGCACAAAACCGGGACCCTCTGCACACGACCTGGCCGCACAGCTGAAGAGCAGCCTGCTAGCAGAGATAGGGCTGACTGAGAGCGAGGGCCCGCCACTCACCTCGTTCAGACCTCATTGTAGTTTTATGGGAATGGTGATATCCCATGACATGCTTCTGGGACGATGGCGTCTGTCTTTAGAACTTTTTGGACGAGTGTTCATGGAAGATGTTGGGGCTGAACCTGGATCGATCCTGACAGAGCTTGGTGGCTTCGAGGTGAAGGAATCCAAGTTCCGGCGGGAGATGGAGAAGCTTCGCAATCAGCAGTCCAGGGATCTGGCTCTGGAGGTGGACCGGGACCGAGACCAGCTCATCCAGCAGACCATGAGGCAGCTCAACACTCACTTCGGGAGGCGCTGCACTACCACTCCCATGGCTGTGCACAGGGTCAAAGTCACCTTTAAGGATGAGCCTGGGGAGGGCAGTGGGGTCGCACGCAGCTTCTACACAGCCATCGCCCAGGCCTTCCTGTCCAATGAAAAGCTACCCAATCTAGACTGTGTACAGAATGCCAGCAAAGGCATGCAGGCCAGCAATCTAATGCAGCGTCTGAGGAACAGAGACAGGGAGCGAGAGAGGAGGAGCGGTGGACTGCGAGCAGGTTCTCGTAGGGACCGGGACAGGGACTCCAGAAGGCAGCTCTCAATAGACACCAGACCCTTCAGACCAGCATCAGAAGGCAACCCCAGTGATGAACCTGACCCTTTGCCAGCCCACAGACAGGCTCTGGGAGAGAGGCTGTACCCACGAGTGCAGGCCATGCAGCCGGCATTTGCCAGCAAAATCACAGGAATGCTTTTAGAGCTTTCTCCAGCACAGCTCTTGTTGCTTTTAGCCAGTGAAGATTCATTGCGGGCCCGTGTAGAAGAGGCGATGGAGCTCATTATTGCCCATGGAAGaGAAAATGGTGCAGACAGTATATTGGATCTTGGACTGTTAGATTCATCAGATAAGTCACAGCAGGAAAACAGGAAGCGGCATGGCTCTAGTCGCAGTGTGGTGGACATGGAGTTGGATGACCCTGATGATGGGGACGACAACGCTCCTCTGTTCTATCAGCCTGGGAAGAGGGGCTTCTACTCTCCCCGACCAGGCAAGAACACAGAGGCGCGACTAAACTGTTTTCGTAACATCGGCAGAATTCTTGGGTTGTGCCTCCTGCAGAATGAATTATGTCCAATTACATTAAATAGACATGTTATCAAGGTCTTACTTGGTAGAAAGGTGAACTGGCATGATTTTGCATTCTTTGATCCTGTAATGTACGAGAGTTTGCGACAACTGATTCTGGCCTCTCAGAGTGCTGACGCGGAGGCTGTCTTTGCAGCTATGGATCTGGCCTTTGCTATTGACCTCTGTAAAGAGGAAGGAGGCGGACAGgtgGAACTTGTATCCGGTGGTGTAAATATACCAGTTACTCCTCTGAATGTATACGAGTATGTCAGAAAATATGCAGAACACCGGATGTTAGTTGTGGCAGAGCAGCCTCTACATGCAATGAGGAAAGGCCTTCTGGATGTGCTACCCAAGAACTCTCTTGAAGATCTTACTGCTGAAGATTTCAGGCTTCTTGTAAATGGCTGTGGAGAAGTCAACGTGCAGATGCTCATTAGCTTCACTTCCTTCAATGACGAATCAGgagaaaatgcagagaaattGTTGCAGTTTAAGCGCTGGTTCTGGTCCATTGTGGAGAAGATGAGCATGACTGAGAGACAAGACCTGgtTTACTTTTGGACATCAAGCCCGTCTTTGCCCGCCAGTGAAGAGGGTTTCCAGCCCATGCCATCCATCACAATACGGCCTCCTGATGACCAGCATCTGCCAACTGCAAACACCTGCATCTCCCGCCTCTACGTGCCACTATATTCCTCCAAACAGATTCTGAAACAAAAACTCTTACTAGCCATCAAGACCAAGAATTTTGGTTTTGTGTAGAATATAACAAGTGTTTATTGTTGTGTAATATTACTAGTTCCAGttttgtagatttattttttatttgtctatacaattttattaaatgaaatgctgtCACATCCCTGGCggtaacttttttttgtttcctgaaaaCATACATTCCTGCATGGGTTTGTAAGGTTAAAGCCCACAGCTCTTGGCTCTACCAGCTTTGACTGTAATCTCCCAGGTATTTGGCTAGGCAGTGAACTGTTAGCCTAACCCCAGCCAAAGATGACAGcagaaatatgtaattgttacactgtgattatgatttattttattttattttttgccctGAACGGAATACTTAATGTCACTGAAACTTCACTGCTGCCTTTGTGGAAagtctaaaaaaaataaaaaaataaaataatcttgtaTAGAGGGAGTAgggaatttcaaaataaacttgaGGATGcaaaatgttctttgtttttgttacaaaGTTGACTTCCGAGTGCGATTGCTACACTATATTAACAAAAGTGTAAATTCACTCATTAAACTGCATTGattttacatcacattttttgtttgtttttttaagttctgcctataattataaaaacc

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0043130 ubiquitin binding molecular_function

KEGG:

id description
K10593 EDD1, UBR5; E3 ubiquitin-protein ligase EDD1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156942 lncRNA downstream 116261 26275469 ~ 26279621 (-) True AMCG00002682
TU156922 lncRNA downstream 153351 26242254 ~ 26242531 (-) True G125200
TU156899 lncRNA downstream 190011 26204892 ~ 26205871 (-) True G125178
TU156879 lncRNA downstream 265420 26126554 ~ 26130462 (-) True G125160
TU156777 lncRNA downstream 783585 25610117 ~ 25612297 (-) True G125075
TU157020 lncRNA upstream 43475 26495949 ~ 26498450 (-) True G125269
TU157043 lncRNA upstream 201736 26654210 ~ 26654689 (-) True AMCG00002694
TU157045 lncRNA upstream 203154 26655628 ~ 26655871 (-) True G125291
TU157051 lncRNA upstream 209230 26661704 ~ 26663029 (-) True G125297
TU157134 lncRNA upstream 461233 26913707 ~ 26915965 (-) True G125361
AMCG00002685 mRNA downstream 4900 26382511 ~ 26390982 (-) True AMCG00002685
AMCG00002690 mRNA downstream 19986 26363962 ~ 26375896 (-) True AMCG00002690
AMCG00002687 mRNA downstream 57725 26322898 ~ 26338157 (-) True AMCG00002687
AMCG00002689 mRNA downstream 76506 26318343 ~ 26319376 (-) True AMCG00002689
AMCG00002688 mRNA downstream 90221 26283340 ~ 26305661 (-) True AMCG00002688
AMCG00002693 mRNA upstream 143657 26596131 ~ 26608752 (-) True AMCG00002693
AMCG00002694 mRNA upstream 161002 26613476 ~ 26664767 (-) False AMCG00002694
AMCG00002708 mRNA upstream 369491 26821965 ~ 26831030 (-) True AMCG00002708
AMCG00002705 mRNA upstream 404895 26857369 ~ 26875008 (-) False AMCG00002705
AMCG00002707 mRNA upstream 611287 27063761 ~ 27099867 (-) True AMCG00002707
TU156949 other downstream 89959 26303882 ~ 26305923 (-) False AMCG00002688
TU156479 other downstream 2056316 24291787 ~ 24339566 (-) True G124848
TU156457 other downstream 2134059 24261565 ~ 24261823 (-) True G124829
TU156342 other downstream 3210714 23181921 ~ 23185168 (-) True AMCG00002629
TU156333 other downstream 3242718 23085994 ~ 23153164 (-) True G124719
TU157116 other upstream 402419 26854893 ~ 26875246 (-) True AMCG00002705

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00021620 False 8388 mRNA 0.55 59 NC_007127.7 52542550 ~ 52646789 (-)
grasscarp (Ctenopharyngodon idella) CI01000086_01852638_01897719.mRNA False 7894 mRNA 0.54 52 CI01000086 1852146 ~ 1897719 (-)