RNA id: AMCG00002688


Basic Information

Item Value
RNA id AMCG00002688
length 1815
RNA type mRNA
GC content 0.49
exon number 9
gene id AMCG00002688
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 26283340 ~ 26305923 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atggaCAGCTCTGAGATCCTGAGTGACAGAGatgctgattttgtttctcatgtcAAGAATGAAAGTCCATGTAAAGGGAAGCCTCTGGATTTTGTATTCATCATTGACAGCTCCCGCAGCGTGCGTCCTGATGACTATGAGAAAGTCAAGACCTTCATCATCAACATTCTGAGGTTCCTGGATGTGGGGCCTGATGCCACCAGGGTGGGCCTTATCCAGTATGGCAGTATTGTACAGAACGAGTTCTCCCTAAACACCTTCAAGAAGAAGGCCGATGTAGAGAATGCTGTGCGGAACATGATCCACCTGGCCAGTGGCACCATGACAGGCCTGGCCATCCAGTACACCATGAACGTGGCCTTTTCCAAGGCTGAGGGGGCGCGGCCATTGGACATGCACATTCCACGCATTGCCATGATTGTCACTGACGGCCGTCCCCAGGACATGGTGACAGAAGTGTCTGCCAAGGCTAGGGAATCTGGCATTCAGATGTTTGCCATCGGCGTGGGCAGAGTTGATATGAGCACACTGCGTGCCATTGGGAGCGATCCCCATGATAACTATGTATTTCTAGTGGCGAATTTCAGCCAGATCGAGACCCTGACCTCTGTGTTCCAGTCCAAACTATGTGGAGGAATGGACTATTGTGATCTGGGGAACCACGGCTGTGAGCATGACTGTCTGAGCACTGGGACATCCTACATCTGCAGATGCCAGAGAGGGTTCATCCTCAACACTGATGGGAAGACCTGCAGGAGAGAAGACATCTGTGCAATGGGCCTCCATGGCTGTGACCATGAATGTGTTAACATTGAAGACTCCTACATCTGCCGCTGCAGCAAGAGCTATCTGCTAAACCCTGATAGGAAAACCTGCAGAGAGATTGACCATTGCACTTTGGGAAACCATGGCTGTGATCACGAGTGTGTTAACTCTGAAGAGTCCTTTGTGTGTAGATGCTATGCAGGCTACACACTTAACCCAGATGGCAAAACATGTAAAAGAGTTGATCACTGTGCTGTGAATGGCCATGGCTGTGAGCACTTGTGCCTGAACACTGACGAGTCCTTTATCTGCCAGTGCTATGAGGGATATATATTGAATGATGATTTAAAATCCTGCAACAGAATGGATTACTGTGCTGTGAATGCCAATGGTTGTGAGCATTTTTGTGTGAACACAGACAAGTCTTACGTATGCCAGTGCTTTGAGGGATATATGCTTAATGATGATGGGAAAACCTGTAGAAAGTGTGCTGATGGAGTAATTGACCTTGTATTTGTGATCGATGGTTCTAAAAGCCTGGGCCCCTCTAACTTTGAGCTAGTGAAGAAGTTTGTGAATGGGATTGTGGAATCCCTGGAGATCTCCCACATGGCAACCCATGTAGGACTGCTGCAGTACTCCACCAAGGTGCGGACAGAGTTCACCCTGGCTCAGCACAGTTCCAGTGAGGAGGTGAAGAAGGCTGTGGCACAGATGCAGTACATGGGCCGAGGCTCCATGACAGGCAGTGCACTCCGCCACATGTTTGAAAACAGCTTCACCACAACAGAAGGGGCAAGGCCACCATCTGCAAAGGTGCCCAAAGTTAGCATAGTATTCACAGATGGCCGATCTCAAGATGACGTCTTGGAATGGGCGACTAAAGCTCAGGAGGCTGGCATTGCTATGTACGCTGTTGGAGTTGGCAAAGCCATAGAAGATGAGCTACGAGAAATTGCATCAGAACCTGACGACAAACACTTATATTATGCTGAAGACTTTACCAATATGGGTGAAATTGCAAATAAGCTGATGTCACAGATTTGTGAA

Function

GO: NA

KEGG:

id description
K19467 MATN; matrilin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156942 lncRNA downstream 3719 26275469 ~ 26279621 (-) True AMCG00002682
TU156922 lncRNA downstream 40809 26242254 ~ 26242531 (-) True G125200
TU156899 lncRNA downstream 77469 26204892 ~ 26205871 (-) True G125178
TU156879 lncRNA downstream 152878 26126554 ~ 26130462 (-) True G125160
TU156777 lncRNA downstream 671043 25610117 ~ 25612297 (-) True G125075
TU157020 lncRNA upstream 190288 26495949 ~ 26498450 (-) True G125269
TU157043 lncRNA upstream 348549 26654210 ~ 26654689 (-) True AMCG00002694
TU157045 lncRNA upstream 349967 26655628 ~ 26655871 (-) True G125291
TU157051 lncRNA upstream 356043 26661704 ~ 26663029 (-) True G125297
TU157134 lncRNA upstream 608046 26913707 ~ 26915965 (-) True G125361
AMCG00002682 mRNA downstream 7689 26267052 ~ 26275651 (-) False AMCG00002682
AMCG00002679 mRNA downstream 23034 26242687 ~ 26260306 (-) True AMCG00002679
AMCG00002680 mRNA downstream 49297 26208270 ~ 26234043 (-) True AMCG00002680
AMCG00002681 mRNA downstream 144844 26136957 ~ 26138496 (-) True AMCG00002681
AMCG00002673 mRNA downstream 277983 26002815 ~ 26005357 (-) True AMCG00002673
AMCG00002689 mRNA upstream 12682 26318343 ~ 26319376 (-) True AMCG00002689
AMCG00002687 mRNA upstream 17237 26322898 ~ 26338157 (-) True AMCG00002687
AMCG00002690 mRNA upstream 58301 26363962 ~ 26375896 (-) True AMCG00002690
AMCG00002685 mRNA upstream 76850 26382511 ~ 26390982 (-) True AMCG00002685
AMCG00002686 mRNA upstream 90221 26395882 ~ 26452474 (-) True AMCG00002686
TU156479 other downstream 1943774 24291787 ~ 24339566 (-) True G124848
TU156457 other downstream 2021517 24261565 ~ 24261823 (-) True G124829
TU156342 other downstream 3098172 23181921 ~ 23185168 (-) True AMCG00002629
TU156333 other downstream 3130176 23085994 ~ 23153164 (-) True G124719
TU155250 other downstream 8293875 17922452 ~ 17989465 (-) True G123829
TU157116 other upstream 549232 26854893 ~ 26875246 (-) True AMCG00002705

Expression Profile