RNA id: TU157116


Basic Information

Item Value
RNA id TU157116
length 3983
RNA type TUCP
GC content 0.35
exon number 3
gene id AMCG00002705
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 26854893 ~ 26875246 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCACACTGGACATTAGCAGCTGACTATATTTACAGACTTCCCCAGTTACACAACCTATTGGACTGCTGTATAATTTCCAAACTGAAGGCCAGCTCCTTGAATAGCTCAAAGTTCATCTGGGTCTCTGTTTATACCAttgtaaacacacagaaacatggaCTGGAATATGCTCAAGGATGAGGAACAAGCTCATGTCACAAAAACAAGGGGAGAGACACATGATCTTGCTGGAGAGTTCTTGCACATACTATTAATAACATTGGAATGTATACAGTGGCCTCATGGCAAGCACCAACAACAATAGTCAGACTGCCTTCTTCATAAACACATCCACCTCTCATTACCAATAGTGTacttagtaaaaaaataaaaagaacaaaaaagtatttgttacTTGTTTTCTGAAATTTCTTAAGTGGAAGAAGATTGTCAGGAAAACCTGGATGCTCTGTATAAACAGTGAGATATATCATGTTTCTAGAAATATGTGGTGCAGACTGGAAACCAGGATGGTTAAGAATGTATGTGCACCTGCAGCTGTGATTGAAGACAAAATCTATATCATTGGAGGGTACACAAGAAGAATGATAGCCTAtgacacaaaatcaaacaaatttgtaaaatgtgcacAAATGAAGGAAAGAAGAATGCACCATGGAGCCACAGTGATCAACAATAACTTGTATGTGACTGGCGGTCGCTACATCAGTAACCATAATGTTATAGAAGACTCTGATTGTTTTGACTGCTATGACCCCAAAGCAGATGTATGGACCTCTAAAGGGACACTGCCTTACAAACTCTTTGACCATGGCTCTGTTCCTCTGATTTGTGTCTCCAACAAAGGAAACCCACCATAATTTCTTACTCTTAGCAAATATCTGTTTAATTCTTACAGATTTTGAAAGAAAGTAAACAGCAAttcattgtttatttggttgtttacttaaataattacatgttgtacagtatttttcctttggtatttttttcattactttgatattacatttttcctgAATTTGCTGCTATTATGGATAGGAAAATGGTAGGGCCTGCAGTGTGTCTTAAGAGAAACTAAGTGCATGCTTTGTATCACATTATCTAAAGAGAGTGTGCTAATGTGAATACTTTGTGTTCACATTTACTCttattcaaaaatgtgtttatcattTATGCACCTGTCTGTCTCACCAAAACTCAAATCCATTGAGAATCCAAATAAATGAATCTGCTGATCATCTTTCTATACATAAGaatataataaagtttacaaacgagagtaGGCCATtagacccatcatgctcatttggtgtccattaataactaagtgatccaaggatcctatccagtctatttttaaatgttgctggagagtttgttccagatcaTAATAActttttgtgtgaagaagtgtctcctgttttctgtcttgtatgctttgaagcccaatttccatttgtgtccccggatGTGTGTGtacctgctgatctggaaaagctcctctggtttgatgtggtcgatgccttccatgattttgaagacttgaatcaagtccccatgtagtctcctctgttccagagtgaaaaggttcagttccctcagtctctccgagtaggactttcccttcaaacctggaataagtctggttttTCGACTCTGAATTGCCACTAGAGCAGCaatttcttgaagtgtggtgcccagaattATGTATAAGCCTATGCACTGTTTTGCAGTATGCCATTTAAAGTATGCAACTTTTCATACCTACAATATATTAACCAAAATGTATAAACCCTTAAATCAACATTTACAGACatcacaaaaatgtttattttacattttgttttaccttgTCTGACTAATTGAAAGGTAAACTTTAGAAATCTACTTTTGTATCAAGttctctcctctcacatgaagtgaagaaaataactaaggATGGGAGTTGGAGAACTTGCAACAAACAAGCTTCACACCtgtacaaaagacaaaacaaaacagagaaaactacttttattgttttacttttgaagAACAATACTCAACCTCAGATTTAAGATAAGTGTACCTAATCTACTGTTTCAGATCTGAACCACTGACTCCCGTATTCTGCTCTGtccttgttttaaatgctaAGCATGTGTACCGCTGTCTTACCTACATAGGTCAGTAATAGTATCCAGCCATGATCACATTCTTTCTACAGCATACAGGTAGCAGATTAAAGCCatgcatatattaatttatctaaGAGAGCATCATTTCAGCActgggttaaaataaaatgcctagAGCAATAGaacaataaaagtatttgataaatCAATTATTCATTGGGAAGAAAGGGattaataaattgtttattgCTTACATTTACAGAGCTTAAATTATGACAGTTATAACTTGCTTGcacaatcaaattaatttgtacaatCAAGACTAATTTATAAACGGATTTAGTAACATTGACAAATGCATTTATCAATGGTTATAAAGTGATAAATCCTTAGTAATGTGGTTAATAAACTAGAAATAGTGGCATTAATAAAGTATCTGTTCATGATTGTAACTTATTTGTTCATACTTTATAAATGAGTTCATCATCTGTTAAGgcttcataaagcatttatatggggaccttattataaagtgctaACCCATCGGCttatattaccctgaatacccacagtttccaattttaggatcagtctttagtgtggaaccttgtcaaaaactttctgaaaatctaagtatatcatatcatatgccatatctacagctgcagttatatgttcaaaaaactctaaaaaattattaagacatgatctgccttgtctaaatccatgttgactatcaacccgaatatggttttcaattaagatgctcctctattttctgtctaatcattttttcaaaaATTGTACACGTAATGCAGGTgaaactgattggtctgtaattttctggctcagttttgtcccctttctggTGGATAgttatgacatttgcagttttccaatcagttggcacatcccctgttctaagtgtcatttggaatattttaaatgatgtaaataacctttaaatgattattttaatttctataagTACTATTGGAAATATActatctggcccaggtgatttgtttgtttttaattctgctaatccctttaatacctcctcctcatttatccggATATCTGatagagtttgactggactgattgtttacctgtggcatgttatctgttttttcttttgcaaaaacttctgtgaaatactcgtttagaacatttgacacatcttgttcattttctaagatacttcaatttttagcttttagctgtttcacttcctcctttattgacctcttgctgttgaaaaaagctctttgcattagttttagctccaagagctgtttctttctatttccctcatTGTTTTCCTGATCCCTATCTTAACACCcttttgcagttctatatattctttgtttttgtttcagctcTATTTCTTAATactttttgcatacttctattaaacaattttggccaatgttttttggtcctcaatttgttttttgtcctcaagttttggtacagatttctcctgagcctcaagtagtatatacttgaaatataaacatccatttatatttatatttatatctatccatcaactgaatctgtatacAGTGTGGCCCAGTCTAactctaagtgctgcctcataccttctaAAATTGTAtaccattgttttattaaagtatgcctcaaaactcatcatattgtgatcacagtttgccattggttctctaactagtgtccctctgactctatatttgtcatttgaaaagatcaaatcaatgcatgctctctctctggttggttccctgacagatttaccatctcaaccatttctatttctgcttctgtagtcccaactgggctaagtttgggaaatttaaatccttgctacatgcagtcctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157051 lncRNA downstream 191864 26661704 ~ 26663029 (-) True G125297
TU157045 lncRNA downstream 199022 26655628 ~ 26655871 (-) True G125291
TU157043 lncRNA downstream 200204 26654210 ~ 26654689 (-) True AMCG00002694
TU157020 lncRNA downstream 356443 26495949 ~ 26498450 (-) True G125269
TU156942 lncRNA downstream 575272 26275469 ~ 26279621 (-) True AMCG00002682
TU157134 lncRNA upstream 38461 26913707 ~ 26915965 (-) True G125361
TU157152 lncRNA upstream 102438 26977684 ~ 26977920 (-) True G125376
TU157195 lncRNA upstream 256640 27131886 ~ 27197333 (-) True G125415
TU157256 lncRNA upstream 490216 27365462 ~ 27365663 (-) True G125473
TU157257 lncRNA upstream 493362 27368608 ~ 27368869 (-) True G125474
AMCG00002708 mRNA downstream 23863 26821965 ~ 26831030 (-) True AMCG00002708
AMCG00002694 mRNA downstream 190126 26613476 ~ 26664767 (-) False AMCG00002694
AMCG00002693 mRNA downstream 246141 26596131 ~ 26608752 (-) True AMCG00002693
AMCG00002686 mRNA downstream 402419 26395882 ~ 26452474 (-) True AMCG00002686
AMCG00002685 mRNA downstream 463911 26382511 ~ 26390982 (-) True AMCG00002685
AMCG00002707 mRNA upstream 188515 27063761 ~ 27099867 (-) True AMCG00002707
AMCG00002704 mRNA upstream 238959 27114205 ~ 27119264 (-) True AMCG00002704
AMCG00002709 mRNA upstream 265879 27141125 ~ 27141425 (-) True AMCG00002709
AMCG00002706 mRNA upstream 365090 27240336 ~ 27244422 (-) True AMCG00002706
TU156949 other downstream 548970 26303882 ~ 26305923 (-) False AMCG00002688
TU156479 other downstream 2515327 24291787 ~ 24339566 (-) True G124848
TU156457 other downstream 2593070 24261565 ~ 24261823 (-) True G124829
TU156342 other downstream 3669725 23181921 ~ 23185168 (-) True AMCG00002629
TU156333 other downstream 3701729 23085994 ~ 23153164 (-) True G124719

Expression Profile