RNA id: AMCG00002706


Basic Information

Item Value
RNA id AMCG00002706
length 837
RNA type mRNA
GC content 0.50
exon number 5
gene id AMCG00002706
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 27240336 ~ 27244422 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCAAATTCAtgcattgtttctttgtttaaacaGGAATTTTCCAAAGAGGATGACAGCCTTGAGACTTTATTGGAGAATGTTGTTGGACTCCGGCAGATGCTAGAGAGTGCAACTGATTCTCCACCTTCAAATGAACAAGAGGCAGAACCCTCACTGCCTGCCACTGAGAGTCTGCCTGTCCAGTTCAATAACAGGACTGTTTATGTCCTCTCTGATATGTTTGATGACCAGCTGAAGGCACTATGGTTTTCTCCCTTCCAGTCTGAAGAAATGGATGCTGACCTAGATACAGTGAAGGTGGATTTGGTGGGTCTATCAGAGGAGTGCTGCCCTGATTTTGACTTGAAGGCAGAGTTGGAGAAATCTTTCCTGACAGAGCCCACCTCCCCTGGACGGACAAAGGCACCCAAAGGTTTCAAGCTTGGTAAACACAAACACGAGACATTCATCACCTCCAGGTATAGAGCTactatAAAACAGAACACCAGCCGTCCTCCATCAATGCACGTGGATGATTTTGTGGCAGCAGAAATCAAAGACATTGGGCCCCCCACAGGCTTACTTCAGCCCAAAAGGACACCTAAGGGCTCCCCAAAGGTGCCCACTCGAGGGCTCTTCACCGGGAACAGAGGCAGCAGGGGAGTCTTCCATAGCCAGGCACGGTTCTTCACTCCCCCAGCTCCCAAAGGCAATTATAACAGGCGAGAAGGAGGCCGAGGGTCCAGCTGGAGTGCTCAGGTTGTCCCAGTGACACACCGAGGGACATACAGCGAGGCCAGGGGTGGTCAGAGCAACTTCACTAGAGGACCTCTCCCATCCAGACAACCTTCAGCA

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157195 lncRNA downstream 43003 27131886 ~ 27197333 (-) True G125415
TU157152 lncRNA downstream 262416 26977684 ~ 26977920 (-) True G125376
TU157134 lncRNA downstream 324371 26913707 ~ 26915965 (-) True G125361
TU157051 lncRNA downstream 577307 26661704 ~ 26663029 (-) True G125297
TU157045 lncRNA downstream 584465 26655628 ~ 26655871 (-) True G125291
TU157256 lncRNA upstream 121040 27365462 ~ 27365663 (-) True G125473
TU157257 lncRNA upstream 124186 27368608 ~ 27368869 (-) True G125474
TU157258 lncRNA upstream 126172 27370594 ~ 27370875 (-) True G125475
AMCG00002709 mRNA downstream 98911 27141125 ~ 27141425 (-) True AMCG00002709
AMCG00002704 mRNA downstream 121072 27114205 ~ 27119264 (-) True AMCG00002704
AMCG00002707 mRNA downstream 140469 27063761 ~ 27099867 (-) True AMCG00002707
AMCG00002705 mRNA downstream 365328 26857369 ~ 26875008 (-) False AMCG00002705
AMCG00002708 mRNA downstream 409306 26821965 ~ 26831030 (-) True AMCG00002708
TU157116 other downstream 365090 26854893 ~ 26875246 (-) True AMCG00002705
TU156949 other downstream 934413 26303882 ~ 26305923 (-) False AMCG00002688
TU156479 other downstream 2900770 24291787 ~ 24339566 (-) True G124848
TU156457 other downstream 2978513 24261565 ~ 24261823 (-) True G124829
TU156342 other downstream 4055168 23181921 ~ 23185168 (-) True AMCG00002629

Expression Profile