RNA id: AMCG00002708


Basic Information

Item Value
RNA id AMCG00002708
length 3464
RNA type mRNA
GC content 0.35
exon number 9
gene id AMCG00002708
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 26821965 ~ 26831030 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGAAAGTTTTGCAACCAAGAACAAGATGGTAAACAAAGCCACGTGCTGTGAAAGTCTTTCCAAAAGGGGCGGGATTGTAAATATTTCCGGTAACTTCGCAGGCTGCTATAAATACAACTGCGTTCACTGAGCTGCAGCAGAGCACAGAGAGCAGGAAGAGAAAATCCAAGcgaaacaaaaccttttttaaaatactaaaccaaataaacagtatttttaatttagaaactCAGGTGATAgatagtttttcttttataatttgAAATCTTCCAAGATGCCATTTTTAGGACAGGACTGGAGATCCCCAGGACAGAGTTGGGTTAAAACTGAAGAAGGCTGGAAAAAATACTCagatgagaaaaacaacaatgttgcTGAATTAAAGAGCTATTGTAAAAGTGAGGagttttataaagaaaatatatttcttgctATGAATTATGATGTGGCTGCAAAGAAACGCAAGAAAGACCTTCtgaataacaacacaaagatTCCTTATTTCCATCGGGATAAATGGATATATGTTCACAAAGGAAGTACAAAAGAGCGTCATGGCTACTGTACTCTGGGAGAAGCATTCAACCGATTAGACTTCTCTAGTGCAATTATGGATTCCAGGCGATTCAATTATGTAGTGAGGCTGCTGGAGCTGATTGCGAAATCTCAGTTGACGTCACTGAGTGGAGTGGCTCAGAAGAACTACATGAACATTCTGGAGAAAGACATGGGGAAGTCCGTGCTGGTGGGAAATATTAACATCTGGGTCCATCGCATGGAAAACATCCTTCACTGGCAACAGCAGCTCAACAACATCCAGATCACCAGGCCTACGTCAAAAGGCCTGACCCTTACAGACCTGCCAATGTGCCTCCAGTTGAACATTATGCAAAGGCTGTCTGATGGCAGAGACCTGGTGAGCCTAGGCCAGGTGTGTCCTGGCCTGAATGTACTTAGTGAGGATCGGCTGTTGTGGAAGAAGCTGTGCCATTACCACTTCACTGACCGCCAGATCCGCAAACGTCTGATTATGTCTGACAAGGGCCATTTGGACTGGAAGAAGATGTATTTCAAGCTGTCTAGGTGCTACCCCCGCAAGGAGCAATACAGTGACACATTGCAGTTCTGCACACACTGCCATATCCTCTTCTGGAAGGACACAAACCATCCATGCACAGCCAACAACACAGAGGGTTGCTGCATTCCTGTTTCCCCACAGGGCTTCATTAATCTGTTCAAATATTGAGAGGCTATAAACACTAAATTGTACAAGTTTTTGATGGTGCCATGGATTTTTGGAAAGTTATGAGATGGGACTGATCATATGATGACAAGCTCTAAGCTGTGAAGGTGCATAGAGAATAAGTGACAAGAATTGGTGGCTGTTCTACATCATAAGAACAATAGAAACATGGACAAAAAGGCTGGAGACAATGGGACTGTTCAGAGAGCTGACCATAACGATTACATGCTCAATTACAAGTCATATACAACTTGCAGcctattcttttttttacacaaaatactttttttaaaaacattgcttatgttttttttttttaattaaggatCAAGCCAGTTTAATGTAGATTCCTGCATTTTTccactaaaatatatatattttgtgtaatatatattttatgactGAAAGATATTTCTACATGAAAGAAAtggtaaatatgtattattctatAACTCTAGTCTTGAAAgtatttgttaatgttattaGTTCAAacattgattaataaataaacatatatacatgtataaaaaaaaaaaaaaaaaagtaagccAATGATCTCTTGGCAGAGATTTTGGGTTTAAGTTTGGGTCTCGTTGGGGCTCTCTAGTCTTTACAAATTTGCCCTCAGTAACACTAGTTATGGCCCGTTTGGCTTGGTCCACACATTGAGCACTTTTCTGGATTATGCAGAAAAGGGTTAGGAAAATATGGTAATGTTCAGAAAATGTAGGTGGTAGTGTGATAAGTGCTGATTGAAATTAAGTATGCAAacctatatttttaatgtaaatttattttttcacttttttatacACTTGTTATTTGCTAcagtttttttccaaaataatgtgatatatctgtgtgtttgtgttttatgtagCATTGCACTTTCTGATGGTACAGTACCCTAAATGAATAGGTATGTCACTGAAGTGTGTTGAACCTCTTGAAACAGAAGTCGAAAGGTGAATACCGTATACTAACTGcattgtggttttattgttttaagctTCTTaattattcagtgttttttaattgagaCAGTGATGATTATTAAATGATCATTATTacatgcagttaaaaaaaacttgaaattgGTTGTGGCTTTAATCCAAGAAGAAGTGAGGAAACTGTCGATAATACTAATTTTaagtattacttttttattatttccataaaTGATAGATCCAATTCATACAGATCAAAGATTCTGAATAAACTTTGCAGTATTGCAGTATTAAAGCATGCACTGGAATGAGCCATGAGGCGTATTAGGAATTTATGCCtctttaaaagtttaaacattaaaaataataccagttaaaaaaattatataacaGTATGTTAAGTTATACAGTTAACTTTTATAAGATTTCCATATCATGAGAGTAGATGTTAAAACCTCAGATTAGAACTTGTCTCTCACCAAGAAACACCTCAATGCATTTAATAGTTGTTTTTGAggcactgcatttttttaactgaactgATTCAATGAGAAATAGTTACAGCTTGTGGAAGTGTACTGCATGTAAAACTAGGtgcagaccaaatcaaaactttggcctGCCTGTCAAAATCCAGTACTTTATGgtgcatttgctttttaagaAAAATCCTGTCAATCAAAAACCCGCTATCtggtattgtaattgtaatttgctaGTGTCAATTAATTGCTAAATCAGTATTTGATATTAGTTAAAATCATCTGATATGTATAAAAAAGCATTGTATGGAAATGGTTAGTGTGTTTCTGTAAAAGACAAGTACAAGACAATGATATGTCATTTAATAACCTTGTTTTTGAAGACTGCCAAAATGggattacacattttaaacaatccttaattttttttaaacgtttttacattatttgtgtgTTAAGAATTGGTATAATCTAGGAACCTTTTTGTATTGTAACTTTGATACATTTTGTACTGCACAACTGCATGAtgctatttcatttttttattgatttcccttttttctagtttaaaaaatgtgtgctCATTATTTTAGTGCTGAAAAGAAATTTTATTTATCTCTTAAATGCCAGCTGTATAGTGATTTTTATGTTTATCCTCACATGGGTTTTATTTACCTGTGCCCTATGAATGGTGTCCTGTGTGACTGGTGTTTGTCCATCACAGTTCTGTTGAGGTGTACTGCTGGTTAAATAAACCATCACAAATACTACCACATTCTAAGGTCTGTTCTT

Function

GO: NA

KEGG:

id description
K10305 FBXO25_32; F-box protein 25/32

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157051 lncRNA downstream 158936 26661704 ~ 26663029 (-) True G125297
TU157045 lncRNA downstream 166094 26655628 ~ 26655871 (-) True G125291
TU157043 lncRNA downstream 167276 26654210 ~ 26654689 (-) True AMCG00002694
TU157020 lncRNA downstream 323515 26495949 ~ 26498450 (-) True G125269
TU156942 lncRNA downstream 542344 26275469 ~ 26279621 (-) True AMCG00002682
TU157134 lncRNA upstream 82677 26913707 ~ 26915965 (-) True G125361
TU157152 lncRNA upstream 146654 26977684 ~ 26977920 (-) True G125376
TU157195 lncRNA upstream 300856 27131886 ~ 27197333 (-) True G125415
TU157256 lncRNA upstream 534432 27365462 ~ 27365663 (-) True G125473
TU157257 lncRNA upstream 537578 27368608 ~ 27368869 (-) True G125474
AMCG00002694 mRNA downstream 157198 26613476 ~ 26664767 (-) False AMCG00002694
AMCG00002693 mRNA downstream 213213 26596131 ~ 26608752 (-) True AMCG00002693
AMCG00002686 mRNA downstream 369491 26395882 ~ 26452474 (-) True AMCG00002686
AMCG00002685 mRNA downstream 430983 26382511 ~ 26390982 (-) True AMCG00002685
AMCG00002690 mRNA downstream 446069 26363962 ~ 26375896 (-) True AMCG00002690
AMCG00002705 mRNA upstream 26339 26857369 ~ 26875008 (-) False AMCG00002705
AMCG00002707 mRNA upstream 232731 27063761 ~ 27099867 (-) True AMCG00002707
AMCG00002704 mRNA upstream 283175 27114205 ~ 27119264 (-) True AMCG00002704
AMCG00002709 mRNA upstream 310095 27141125 ~ 27141425 (-) True AMCG00002709
AMCG00002706 mRNA upstream 409306 27240336 ~ 27244422 (-) True AMCG00002706
TU156949 other downstream 516042 26303882 ~ 26305923 (-) False AMCG00002688
TU156479 other downstream 2482399 24291787 ~ 24339566 (-) True G124848
TU156457 other downstream 2560142 24261565 ~ 24261823 (-) True G124829
TU156342 other downstream 3636797 23181921 ~ 23185168 (-) True AMCG00002629
TU156333 other downstream 3668801 23085994 ~ 23153164 (-) True G124719
TU157116 other upstream 23863 26854893 ~ 26875246 (-) True AMCG00002705

Expression Profile