RNA id: AMCG00002709


Basic Information

Item Value
RNA id AMCG00002709
length 219
RNA type mRNA
GC content 0.50
exon number 2
gene id AMCG00002709
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 27141125 ~ 27141425 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGAGAGTAGATGACAACACTGTGATTAGAGCCCGGGGCCTTCCATGGCAGTCGTCAGACCAAGATATGGCCCGATTCTTCCGTGGACTCAACATTGCAAACTCTGAGGCTCAAGGCAGGAGGAATGGGGAAGCTCTGGTAAGGTTTGTGAGTGAAGAGCACAGAGACCTGGCCttgcagaaacacaaacaccacaTGGGAAACCAATACATAGAG

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157152 lncRNA downstream 163205 26977684 ~ 26977920 (-) True G125376
TU157134 lncRNA downstream 225160 26913707 ~ 26915965 (-) True G125361
TU157051 lncRNA downstream 478096 26661704 ~ 26663029 (-) True G125297
TU157045 lncRNA downstream 485254 26655628 ~ 26655871 (-) True G125291
TU157043 lncRNA downstream 486436 26654210 ~ 26654689 (-) True AMCG00002694
TU157256 lncRNA upstream 224037 27365462 ~ 27365663 (-) True G125473
TU157257 lncRNA upstream 227183 27368608 ~ 27368869 (-) True G125474
TU157258 lncRNA upstream 229169 27370594 ~ 27370875 (-) True G125475
AMCG00002704 mRNA downstream 21861 27114205 ~ 27119264 (-) True AMCG00002704
AMCG00002707 mRNA downstream 41258 27063761 ~ 27099867 (-) True AMCG00002707
AMCG00002705 mRNA downstream 266117 26857369 ~ 26875008 (-) False AMCG00002705
AMCG00002708 mRNA downstream 310095 26821965 ~ 26831030 (-) True AMCG00002708
AMCG00002694 mRNA downstream 476358 26613476 ~ 26664767 (-) False AMCG00002694
AMCG00002706 mRNA upstream 98911 27240336 ~ 27244422 (-) True AMCG00002706
TU157116 other downstream 265879 26854893 ~ 26875246 (-) True AMCG00002705
TU156949 other downstream 835202 26303882 ~ 26305923 (-) False AMCG00002688
TU156479 other downstream 2801559 24291787 ~ 24339566 (-) True G124848
TU156457 other downstream 2879302 24261565 ~ 24261823 (-) True G124829
TU156342 other downstream 3955957 23181921 ~ 23185168 (-) True AMCG00002629