RNA id: TU150603


Basic Information

Item Value
RNA id TU150603
length 2299
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G120193
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 100119 ~ 103273 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACCccctctttttttatttgtttttttttttaagaaaagactAGACAGTACAACAGCATCTTGGGCATATACAAGACATGGCAGAATTAGGagcaattataaataaaatcgaGAGCAAACctcaaaattaaagaaataaggaaaaaaggaaaccattataaatacaattaatgttttccaaatgtcaCCTTTTTAAAACCTATAAAGTATCACGCTATACTGGTTAATTGAGAAAGTATTAAGCTTAAACCATGTATGCATGTGAGTATTtaagtttaatatataaatataagattATAAATCAATTACTTCAGAGTTCATGGCTAAATTTGGAACACCTGATATTAACAATTTCCATATTAGCTGCTGCCACACACAACTGAACACAAAGGATTTGGGACAATTaggttacttatttttttcaactGCAAATTTTAAATGACTTACTACGTCAGCAAGCAGAGAAATAGCGGCCCAGCAAACTGAGTATAACCTAAAACAGGGTTTCTTCTGGTTTTCGGTTCACAAATGTTTTCTATACATGTTAAACATTTTTACTGCGCTAAACTACTTTCAGCTCTTAAACAATTAgcccagaaaacaaaaccagcatTAACTTCGTACACATGGGATTGTGTCCATTTGTCATGACGAGGAAACCAATCAAACTGAGGACAGACTGAACAGATTGCAGTTTGCTTTACACAACATACTGGAAAAGggaactggggaaaaaaaagggacTGAATGCATAACAAGTCTAAATAATGAGGACTTCAGTGACAATGAACATCAGAGCCCCTGGACATTTCACAGCCCAGCAAACATAAAAACCCACTAGCGtttcttcaaatgtttatttgaatccACTGTAGAATATTGCAcaaaagttttcatttaaaaatatacggACATCCATGTGTCTGAATACAGGTGTTGGATTTTAAAccattaatggaaaaaaatcatatatatcgTACTCTACTTTCCTTTCTACGTGAACTGAGACTTGTTTTGGTTCTGCCTGTGTTTCTAATAGTTTCCTGTGTGGAGAACTGAGGAGTCGACTCCTCACCGCTTGAGCAGCAGTGACACTAAGTGGTTCAAACAGGAAACTACCTTAAACATGACTATCGTTGAGAACGAACTGCATCGATGACGTAGTTATGGTCATAACAATGTTCACCCTAAGAGCTACATTGTCTTAATGTACACAATGTACATAAAATACTAAAGTTCAGCTAAACGTCTCACAGATGTGCCACAATAAACAATGTCTTTAATACTGCGTCTGATGGGAAATGATACAGTATAAAAACGGCTTATCTTGTCAAGACTTCTTAAAGAGCTCACTTGAAGAGGGATGCCCTCTGCGCAGCAGCAGACGCACAGATGTCTTTCGACTGTGGTCAATGAGGAGTGTGGAGAAAGACGCAGATGAACCCAGCCTTTCTGAGTGGATTGGTCTTCAGTTAGTTCAGGCATCACTCTCGTACAGAAAAACGCAGCTAAGTAAGATACacaccagacagacagacacagtctTACCGTTATAGAATCGATTCATTATTTACAAATCATCAGGATTGTATTCTGGaagattcatttaaaaataaataaatgagtcaaACTGCAAATCATTCGCTGCCCAGATTAAGTAATGCGTTACAAAAGCACGTCTACTCACTCCTGCCTCACCCCTTTACCCTTCTTGTCTAAGTGGAATGGATGGTGGTTGGACCGAACGTGGTTTCCGTTTTAGTTCTCGCAATGAGACGCTGAGAATTATGTCAGTATTGCTTCCCCTGTTCTGACACCCATGAGCCAACCTGTAGGTTTCGCATCACTGCAGCACTTACACAAATCACACCCCCCCCTTCAGATGCCCTTCAGTCCCGGGTTTCTCATCTCCCGCTTTGTTTCCATTCGATTCTTTGTCTCAGCCAGACCCCCGAGTGTCTCCGCCAGGACTCCCTTTCCTCATTCTTGTGCTATGCTTCTGAGTACGTACTTCACTGTGTAGGCGAACGCTGCGAATCCCACTATGACGAACAAGTTTGCCAGGGCGCCCCCGAGGAGTCCGTGGTTGCGGTTGGCCTGCTGGAGGCCGGGGGGGTTGGCTCCGCCCAGCGGCACGTGGCCGTTGAGCACCGGGAGGCCGTTCTGGGCGTTGTGTGCCTCGCCGTCCGGCACCACGTCCGGGAGAGGCAGCACCTGGGGTCTGATGCTCAGCTCCTCCTGCACTTTCTGCTTCTGCTTGATTTCCTATGAACAGTGATgggaaaaatcaatacaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150611 lncRNA downstream 19269 122542 ~ 123168 (+) True G120201
TU150675 lncRNA downstream 564466 667739 ~ 668057 (+) True G120254
TU150981 lncRNA downstream 1770939 1874212 ~ 1876528 (+) True G120494
TU151008 lncRNA downstream 1794661 1897934 ~ 1955361 (+) True G120516
TU151033 lncRNA downstream 1893154 1996427 ~ 2005914 (+) True G120536
AMCG00001998 mRNA upstream 28248 57268 ~ 71871 (+) True AMCG00001998
AMCG00001995 mRNA upstream 69579 29548 ~ 30540 (+) True AMCG00001995
AMCG00001997 mRNA upstream 72538 25438 ~ 27581 (+) True AMCG00001997
AMCG00002001 mRNA downstream 152039 255312 ~ 263137 (+) True AMCG00002001
AMCG00002002 mRNA downstream 164535 267808 ~ 275768 (+) True AMCG00002002
AMCG00002000 mRNA downstream 176934 280207 ~ 289733 (+) True AMCG00002000
AMCG00002005 mRNA downstream 195238 298511 ~ 316562 (+) True AMCG00002005
AMCG00002009 mRNA downstream 231163 334436 ~ 398486 (+) True AMCG00002009
TU150678 other downstream 579397 682670 ~ 684326 (+) False AMCG00002019
TU150681 other downstream 590349 693622 ~ 992764 (+) True AMCG00002019
TU151011 other downstream 1820749 1924022 ~ 1940816 (+) True G120518
TU151290 other downstream 2853635 2956908 ~ 2959475 (+) True G120742
TU151426 other downstream 3430541 3533814 ~ 3536428 (+) False AMCG00002098

Expression Profile