RNA id: TU150981


Basic Information

Item Value
RNA id TU150981
length 2317
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G120494
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 1874212 ~ 1876528 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGTTGACTGTTTCAGAccgcatttaaaaacaataccgggggtgggggggttggccGCGGACCCCCTAGCACTCCCTCACGGACCCATAGTGGTCCGCGGACCccggtttgggaacctctggtGTACATCACACCTGCTTCAAAGagtcatgactgcaagctttagAGCAACAATGTGAAAATTtagagggtctgaatacttttgccaGGCACTGTATATGAACTTTTAAGCTGATTTTAAATTGAGTTACACCTTCTCTCTTAATGGAAATGCTTTTAGTACACTTATTTGCTTGGAGTGCATCTCTCCTAAAGATTGGGCACTTGTTGACTTTTTGACCCACTTGCAAGTCATTCTTACCTGCTGTGGTCTCGGCATCATGATGAAACAGGTCAGGAAAGTACCCGAAATGCAAAACAGTGCTTTGAAGAGGAAAACCCATTCTTCTGcttttccttatttgtttattgtattttgtacacaGTGCAGATCGGTAAGGCTACATTCATGGTGAGTTGATGAGTGACtaacttttaaattatgtttttaaactgaaaagcaCAGACTTCTGTCCAGCGGTTTTAAGGTATAACTGAAACCGGCAAATGCAAACTTTTGCTTCTCATGGAGGTCTTACTATCTACggcaatgttaaaaaaaaaaataactgaatcaGTTAGGTTAAGCAGCAGTTAAAGATGGCAGTCAGAGTTCCTCCTTTAGTGGTCACTGTCCCCTtctaaaaagtgtgtttttgggAGATGGAGTTTGTGGAAAGGTACCTTAGGACCATGGTAGCATTTGAGCCACATCACCAGTTGGAGTTAAAGCTagttgcatttttctttttttcctttttgttttttacacatGATGACTGTTCTTAAAAATCCAATTACACTTCATGGGTTACTGTTCAAggataattaacacatttcatatttaagaGATTAAACCAGGAGTTTTACAGAAAGACAGCTGAGGCAAgtgtctgtaaatatattttggacAATAACTGCAAATCTACAACATTTCCTGTCTATTTATTAATAAGATTAACTGCCTTCAGAATAACGTTAATTACATCAACAGTATTATAAGAAATTCATTTTAAGACACCTTTTTTCTTTGGGGTTTTTATCTTCATTTCTAATTGAGCCCTGGATGATACATACagtgtattttgtacttttctcttttatttcctACCCTGGAAGTTcaaatttgttttctgttttccagaaaatacattgataatgGCAATACGGCTTGTGTTGTACAAGGATTTTCATCTGTTCAGAATCTGAATGAGCACAACAATGCCATACTTTTACATATCGTAATCTCAGCAGTTACGTTTGCCTGCTGTATGTGCACGCCATGGCTGTGAACACAGGCGTTTTCCTAGGTTAGACTTCTAGAGATGGCTGGGGATGGATTCCTGGCTGCTGCACAAAGTTGCTCCAGGACTTCAAACAGGATGTGGAAACGTCCTTAAAACCCCGTTTACATGTAGGATTCGGGGACTGCAGTGTAGGCATTTACCGCCCATTTACTGGAAAATCCTACATTTTCAGAAACGTGATCCTGCAAACCAATAGAGATGTATAATTGTCCTGTCTGGTCATTTCATTGGAAGAAAAGCCTGCTTCCCCTGAGGTCCGTAATCCCGTCAGTTTTCTGATCGAGTtccttttagttttctttttcagaatgGAGTAAATGGAAATTATCGTTTACTTAATAAATATACCATTCGGccctttttctattttaaatcgAACATAACTAATCCTGTTTTGGGTGTCCCATAAAATTCTGTATAgatatgtttatgtataaaaaaagacCTCCTTGTGTCTtgtaatcttttattttctcatgtctaaatattaataattaacttttttgttatttttatacacatttaagCCTTAACTATATTATCATTGTATGTTTATCacaattttatttcctttttttttgtttcatattgatGTTGTTCTGTAACCAGTACTGtatctacatttttttcttagcatggaatatactgtaaataatcTATATAATACTTACTGTTAACCCATTTTCTATATTAAATGATTATATAGGtctagttattattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacctccttTGTCTTGCATTGTGGTACCCTCTAAAGTTTGCGTTGGCTGTTCATCATGCGGCCAAGACTTTAAGAAGAAAATGGaatttgtgtaaaaacaaagaaaaaacaaacaataaaaataatgaaaaactatTTGTATCCTTTTGTTGTTCAATAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150675 lncRNA upstream 1206155 667739 ~ 668057 (+) True G120254
TU150611 lncRNA upstream 1751044 122542 ~ 123168 (+) True G120201
TU150603 lncRNA upstream 1770939 100119 ~ 103273 (+) True G120193
TU151008 lncRNA downstream 21406 1897934 ~ 1955361 (+) True G120516
TU151033 lncRNA downstream 119899 1996427 ~ 2005914 (+) True G120536
TU151065 lncRNA downstream 296942 2173470 ~ 2174499 (+) True G120563
TU151066 lncRNA downstream 298059 2174587 ~ 2176442 (+) True G120564
TU151067 lncRNA downstream 308252 2184780 ~ 2184980 (+) True G120565
AMCG00002048 mRNA upstream 1048 1851995 ~ 1873164 (+) True AMCG00002048
AMCG00002047 mRNA upstream 64931 1802786 ~ 1809281 (+) True AMCG00002047
AMCG00002046 mRNA upstream 123548 1750215 ~ 1750664 (+) True AMCG00002046
AMCG00002045 mRNA upstream 164625 1703230 ~ 1709587 (+) True AMCG00002045
AMCG00002039 mRNA upstream 401836 1464244 ~ 1472376 (+) True AMCG00002039
AMCG00002050 mRNA downstream 10701 1887229 ~ 1904008 (+) True AMCG00002050
AMCG00002053 mRNA downstream 109232 1985760 ~ 1986389 (+) True AMCG00002053
AMCG00002052 mRNA downstream 152085 2028613 ~ 2032618 (+) True AMCG00002052
AMCG00002051 mRNA downstream 178203 2054731 ~ 2076937 (+) True AMCG00002051
AMCG00002054 mRNA downstream 204705 2081233 ~ 2082288 (+) True AMCG00002054
TU150681 other upstream 881448 693622 ~ 992764 (+) True AMCG00002019
TU150678 other upstream 1189886 682670 ~ 684326 (+) False AMCG00002019
TU151011 other downstream 47494 1924022 ~ 1940816 (+) True G120518
TU151290 other downstream 1080380 2956908 ~ 2959475 (+) True G120742
TU151426 other downstream 1657286 3533814 ~ 3536428 (+) False AMCG00002098
TU151430 other downstream 1661091 3537619 ~ 3539554 (+) False AMCG00002098
TU151873 other downstream 3342302 5218830 ~ 5223498 (+) True AMCG00002152

Expression Profile