RNA id: TU151027


Basic Information

Item Value
RNA id TU151027
length 259
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G120533
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 1988369 ~ 1988627 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cctgtttgccttttttattgcttccccacattgtttggatggagaaagtgaggagtccacatagactcctaggtctttctcatgcgttacttcatctagttctgttcctccaatagtgtaattatagtggacatttttgttacctgcatgtaatatcttgcacttgtccacattgaatttaatctgctaggtgtcggcccacaattgaatattatcaaagtccctttgaataacatgagctgctgagattgtatctgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151021 lncRNA downstream 13344 1932253 ~ 1975025 (-) True G120527
TU151001 lncRNA downstream 112308 1874213 ~ 1876061 (-) True G120513
TU150960 lncRNA downstream 460284 1467939 ~ 1528085 (-) True G120477
TU150962 lncRNA downstream 497802 1486551 ~ 1490567 (-) False AMCG00002044
TU150963 lncRNA downstream 497802 1486551 ~ 1490567 (-) True AMCG00002044
TU151073 lncRNA upstream 3980 1992607 ~ 1992897 (-) True G120571
TU151074 lncRNA upstream 4706 1993333 ~ 1993623 (-) True G120572
TU151075 lncRNA upstream 5101 1993728 ~ 1994023 (-) True G120573
TU151076 lncRNA upstream 7141 1995768 ~ 1996067 (-) True G120574
TU151094 lncRNA upstream 174014 2162641 ~ 2162856 (-) True G120589
AMCG00002049 mRNA downstream 166855 1818740 ~ 1821514 (-) True AMCG00002049
AMCG00002044 mRNA downstream 497802 1486604 ~ 1490567 (-) False AMCG00002044
AMCG00002042 mRNA downstream 540613 1441179 ~ 1447756 (-) True AMCG00002042
AMCG00002043 mRNA downstream 557685 1420067 ~ 1430684 (-) True AMCG00002043
AMCG00002037 mRNA downstream 610439 1373743 ~ 1377930 (-) True AMCG00002037
AMCG00002055 mRNA upstream 21846 2010473 ~ 2012433 (-) True AMCG00002055
AMCG00002057 mRNA upstream 96802 2085429 ~ 2119334 (-) True AMCG00002057
AMCG00002056 mRNA upstream 132714 2121341 ~ 2127768 (-) True AMCG00002056
AMCG00002058 mRNA upstream 172917 2161544 ~ 2161834 (-) True AMCG00002058
AMCG00002061 mRNA upstream 186853 2175480 ~ 2210300 (-) True AMCG00002061
TU151271 other upstream 932625 2921252 ~ 2923221 (-) False AMCG00002085
TU151301 other upstream 1006881 2995508 ~ 3004917 (-) True G120748
TU151364 other upstream 1124815 3113442 ~ 3127944 (-) True AMCG00002094
TU151499 other upstream 1725240 3713867 ~ 3716252 (-) True G120907
TU151529 other upstream 1795609 3784236 ~ 3786544 (-) True G120927

Expression Profile