RNA id: TU151234


Basic Information

Item Value
RNA id TU151234
length 2910
lncRNA type inter_gene
GC content 0.51
exon number 5
gene id G120692
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 2861915 ~ 2866024 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGaaatagatgtttttatttgaaaggtGATACCCAGTGATTTCTGCACCACTGAGATTACAAACAGAATCAAAGTCCGattcatgttatttaaaagATACAGATTGCACTTAAGCCGAACTGAGCCACTGCTGTCAGGGACCGTGCAGCAACAGCTCTTTATAATTTGGAGACCCTTAATGTTCCCTAAACAGCCCTGCTGACCCCGTGGCTGAAACCTGAAGGGCTCCTCTGGTCATTGCTCTGCCGCGTGATTCTCCCTGCTTGCCCACCCCGGACCCTCTGTAGCCACTGACAAGAGGACTGGGAGAAGCCAGGCCTCAGTTACTTGAGCTTAATACTCTTCTTGACTCCGGCGCGGATGCCAGACAGCTCTCCCCCGTACCGGTGCTCCTCCCTGCGGACCTCGCGGACCTGGCCCTTTCTGCGGATCTTGGCTCTCCTGAACTTCTCCCTGTGCTTGACTCTGGGGTTCCTGTCAATCTTCTTTCTCTTGGGTGTGAGACCTTTGTTCTTGGCCATCTGGTACGTGATGCCTCTCTTTGCATCTGGGTCGAGCTCCACCTCTTCTCCTTCCGCCAATCCTTCCTCAGTTTCTTGGCTGttcttcttcctcttcagtTTCAGCCTCTCCTCCATGTCTTTGTAGAAGCGAAGCGCGGCCTCCTCGTCCATGTCGGAGTCGGAGTCGGCAGCAGGCTGGAGACCCGCGCGCTCAGCCGCCTCTGCTGGTGGCCGTTTTGCCCCCTGCCTccttcctgccagtcctgcccTGCTGCGACTCAGAGAGAAGCTGGCGCAGCTCGGGGGACAGCCGTGCATCCAGAGCGCCCAGGTCATTGATCAGCTGCAGGGACAAACCACAGCCCTCACCACACCGCCATTTCTGCAATCACCCCCTTCCTCCGTCTAAAAATGGTTCGGTCCAGATCCTGTTACCGACCTACAGCGGCCAATCTGTGTCGCGTCTTCATGCTGCTTAAACTCAACGCaactgacaaacacaaatgtagATCCTGCGATACTTCACACCGCTGGCATTAAGTGTCCTGAACCGTCATTGGTAAACAATTCTACGAACAGGATGCCATTCATACACAAACCACAGAGACTCACATTCCTGTAGGTGACCAGCCGCTCGATCACAGGGTGGTTGTGTGCCGGGATGCGCTTCGCCTTCAGGACCAGGTAAAAACTGATATTGGTGCAATAGctgaggagagaggaaagacaTGAGCACGGCCCTTCTACAGTCGCTTCCTGCATCGTTACACCAGATACCAGAGAGATCAGGGCCGAGAGACATGAGTGACACATGCGTCGGCCTAAACAAGACCAAGAACACCGATCTGGCACAAGAGAgcgtaaaaacaaaaccagcacaAGAGAAAGGCATTGTCATTATTTGGTAACCATTTAAATCACCACTTGTTCTTaaactcattttttattttgaatttgcagTTTATTGAGGAGTATTTAATTCagtattaaaactattttactattattgtttgtttgcacCTGCCGGATTTAAGGGCCATTTCAatgttaatttcatttaattgttcaGAGggagttttatacattttatactttaaaaatattaagctTTTAATAGCTTTTTGGTTGCCTGGTCAGTTCTTCAGCTCAGTGTCTGTGTTATAGTCCCATACCGTGCCATCTAGTGGCCAAATATCATACTGCAGTTCCCATTGTGTTCCAGACTTCTGCTCAAGTTCAGGTTGCAGCTAACAGGTCCCTCTTTGTTTGGTCGTACATGTGTGTGCctatataaacatttacaagaCAGTAGGCTTTAGTCTATGTTAGTCCGGGGGCTACAGTGAGTGGCCCCCTGAGTCAAATCATGCTTTAGGGCCCCCAAAAGACTAGAAACAGCCCTGAGAGAGATGATCTAGTGGAAACCAGATCACTTTTGCAAGAGGAATGTTCCCGATTTCTAGTTTCGGTTCAATCCTACACAATAAAGTGTTCCAGGAAGGTGTCCTAACAGTTTATTCAGCACTAATTTTGAAATCTATAAATCATAATTTACAACTCTGATCCACATTGCTGCAAGAGCTGCTGAAGAGCTCCTAGGTTTTGCTGACAGGGACGTTATGAAAGTAAAAGAAgtaaacacagcacacaggctGAACTCACTTCAGGTAGAGCTGCCGTTTGGTTCGGAGGTAGTCGGCTCCCTGTAAAGTGAAGCACAGAGACGGGGGATCAGTCGAGCTGCCTGACAGTCGGATATATCCACCGCACAGGCACCCACCGCACGGCTGAGTGTGGTGCTCAGGGGTGATTGTAATGTATATAGTGCGGCTGCTGGATTCGCCCCTACACCGATGCTCCGTCCGGAAGCGAGTGTGAACACAGGGAGTCTCGGTGTACCGCGGGGCCCCACCGCCAGGGTCTCACCTTGCCTTTGGGGATCCTGCCGTCCTTCACCATGTCCAGGAGGGGCTGCACCTCGTCCTTCAACTCCATCAGCTGCACACGAGACAACATGATCACGTTTCCGCTCGACTGGCACAAACGTGACTTCAGTCAGCCGAGCCACCAATGATCGCAAGTCTTTTGAAACAGCCTTATGAGTCACAGCCTGTTGTAATCTTGAAAACTACGACGCTGCCCTGCTGTCTCAGCACACAAACACCCCCATGAGTGGACAGACCCCCGACCCCCCAGCCCCGAAGCCACCCCGAGTGCCACGGCGGCGAGACCCCGGTGATACCCGGGCTCGGACCTTGGCCTTGAAGTCCTGTGCGAGTTCCAGCAGCTCCGGGGACTCCTTCTTCAGCAGCTTCAACTTCTCCTTCTGGGACATCTTCTGCAGGTCCTTCACGATCTTCTGCTCCTTCTCCGGGGCCTTGTGCTCCTCCGACTCCGCGGCGAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151233 lncRNA upstream 7788 2852154 ~ 2854127 (+) True AMCG00002076
TU151207 lncRNA upstream 165508 2696064 ~ 2696407 (+) True G120674
TU151110 lncRNA upstream 635935 2225780 ~ 2225980 (+) True G120602
TU151068 lncRNA upstream 658544 2202617 ~ 2203371 (+) True G120566
TU151067 lncRNA upstream 676935 2184780 ~ 2184980 (+) True G120565
TU151316 lncRNA downstream 174543 3040567 ~ 3042435 (+) True G120755
TU151324 lncRNA downstream 177616 3043640 ~ 3046804 (+) True G120763
TU151335 lncRNA downstream 225770 3091794 ~ 3092899 (+) True G120774
TU151339 lncRNA downstream 233583 3099607 ~ 3100142 (+) True G120778
TU151340 lncRNA downstream 234254 3100278 ~ 3101046 (+) True G120779
AMCG00002073 mRNA upstream 129 2857667 ~ 2861786 (+) True AMCG00002073
AMCG00002076 mRNA upstream 7801 2852178 ~ 2854114 (+) False AMCG00002076
AMCG00002074 mRNA upstream 19952 2831684 ~ 2841963 (+) True AMCG00002074
AMCG00002075 mRNA upstream 44943 2816757 ~ 2816972 (+) True AMCG00002075
AMCG00002060 mRNA upstream 610776 2248017 ~ 2251139 (+) True AMCG00002060
AMCG00002080 mRNA downstream 40841 2906865 ~ 2910535 (+) True AMCG00002080
AMCG00002081 mRNA downstream 81442 2947466 ~ 2952329 (+) True AMCG00002081
AMCG00002082 mRNA downstream 101341 2967365 ~ 2986779 (+) True AMCG00002082
AMCG00002088 mRNA downstream 129354 2995378 ~ 3004718 (+) True AMCG00002088
AMCG00002087 mRNA downstream 159040 3025064 ~ 3040023 (+) True AMCG00002087
TU151011 other upstream 921099 1924022 ~ 1940816 (+) True G120518
TU150681 other upstream 1869151 693622 ~ 992764 (+) True AMCG00002019
TU150678 other upstream 2177589 682670 ~ 684326 (+) False AMCG00002019
TU151290 other downstream 90884 2956908 ~ 2959475 (+) True G120742
TU151426 other downstream 667790 3533814 ~ 3536428 (+) False AMCG00002098
TU151430 other downstream 671595 3537619 ~ 3539554 (+) False AMCG00002098
TU151873 other downstream 2352806 5218830 ~ 5223498 (+) True AMCG00002152
TU152254 other downstream 3720630 6586654 ~ 6602608 (+) False AMCG00002190

Expression Profile