RNA id: TU151314


Basic Information

Item Value
RNA id TU151314
length 537
lncRNA type inter_gene
GC content 0.61
exon number 3
gene id G120754
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3008901 ~ 3020156 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCACACATGTATATGGCTGTATGACAGTGCGCAGCCTGTGACTCCCACTCCAGGCCCCAGCAGACATGTCACTTCCTCCCCCACGCCTGTGACACCGCCGCCGCAGACAGAGCGTGAGTGAGGGAGCGTGCGTTTCTGCCGCAAGACACCCTGGCGCGTCAGCAGAGCCAGGAGGCTGGCGGTGGATCACGTCACGTCAGCCAGCCGGAGGCCCGCTGCAGCCCGGCCAGAATGGCGCCGCTGCAACCCAACGGGCCCGAGAGAGAGGGACCGCAGTGCTGGGAGAGTTGACAGATACATCCATGAAATGATGAAGAGTCCCTCTGAGGTCCCACCCCCGCGCCTGGAGCTTGTGTGAGCAAACATCGTGCATGTGACTGGTGCTGCCCAGCCACCTGTGAGAGGGGTGATGTGTTGCAGGTGGACGCAGTGGACGGGTGAGGTCAGGGTGGATGTCTTTGCCAGGGTCCCTGCAGAGGAGGAGCCTGGGGGGGGCGTGCATTGCTGTTGtcaataaagtaataaaataaacgtgTG

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151294 lncRNA downstream 22122 2985573 ~ 2986779 (-) True G120746
TU151291 lncRNA downstream 55419 2953273 ~ 2953482 (-) True G120743
TU151243 lncRNA downstream 160964 2845382 ~ 2847937 (-) True AMCG00002078
TU151216 lncRNA downstream 312514 2696063 ~ 2696387 (-) False G120683
TU151217 lncRNA downstream 312924 2695581 ~ 2695977 (-) True G120683
TU151321 lncRNA upstream 20392 3040548 ~ 3042500 (-) True G120760
TU151354 lncRNA upstream 71620 3091776 ~ 3092899 (-) True G120789
TU151382 lncRNA upstream 156428 3176584 ~ 3176844 (-) False AMCG00002091
TU151407 lncRNA upstream 387329 3407485 ~ 3466461 (-) False AMCG00002097
TU151417 lncRNA upstream 472800 3492956 ~ 3494050 (-) True G120841
AMCG00002083 mRNA downstream 47643 2956881 ~ 2961258 (-) True AMCG00002083
AMCG00002084 mRNA downstream 62748 2935521 ~ 2946153 (-) True AMCG00002084
AMCG00002085 mRNA downstream 77883 2921788 ~ 2931018 (-) True AMCG00002085
AMCG00002077 mRNA downstream 136628 2861912 ~ 2872273 (-) True AMCG00002077
AMCG00002079 mRNA downstream 151774 2856058 ~ 2857127 (-) True AMCG00002079
AMCG00002089 mRNA upstream 23492 3043648 ~ 3066913 (-) True AMCG00002089
AMCG00002090 mRNA upstream 67388 3087544 ~ 3089884 (-) True AMCG00002090
AMCG00002092 mRNA upstream 75564 3095720 ~ 3110908 (-) True AMCG00002092
AMCG00002094 mRNA upstream 93321 3113477 ~ 3128440 (-) False AMCG00002094
AMCG00002093 mRNA upstream 113952 3134108 ~ 3146480 (-) True AMCG00002093
TU151301 other downstream 3984 2995508 ~ 3004917 (-) True G120748
TU151271 other downstream 85680 2921252 ~ 2923221 (-) False AMCG00002085
TU151364 other upstream 93286 3113442 ~ 3127944 (-) True AMCG00002094
TU151499 other upstream 693711 3713867 ~ 3716252 (-) True G120907
TU151529 other upstream 764080 3784236 ~ 3786544 (-) True G120927
TU151612 other upstream 1194559 4214715 ~ 4219877 (-) True G120993
TU152605 other upstream 4816339 7836495 ~ 7839411 (-) True AMCG00002223

Expression Profile