RNA id: TU151321


Basic Information

Item Value
RNA id TU151321
length 1953
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G120760
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3040548 ~ 3042500 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAATTCTAagaatatattattgtaaaaatatatatttgaaacaaatgtacaaCAGAATAGAATATAAAAAAGAAGCATCTGTAAAAGTTCACAGtaacttcaataataatattcaaaagcaaaacaaaatggatgtATTCAGGCGTGtccagtttaaatgtatctgataaacaatattgtgtcttttctgttctgttcagaTGGGGATGCTGTGTTGTAACTCAGTTGCCAGGAGTTGTGAGGATTACAGGTTgtcccctgatccaatagggtCCTCCTGGACATCATCAGGACTCGGACACAATGCAAGTCATGTTACAATCACGATCAAATTCGCCATCTCTGTAAGATCTTGTTCAGTTTACTGCTATTACtttaaagcatttgttttttttgctagTTTTTCAAGCAATGCCAAGTTTTCTCTGGACCAGATTGATTgaatgtcttcatttttttttgtatttctttcagcATGCCCACTATCTGATTTGAGCAATCAGCTGTTCTGCAAGACACACCAAATCATGGTATGAATGACAGGCTTCGGCTTGCTCTCCACACTGTCTGTTGTGTAAGTAACCCGGCCGGGGAAAGTCTCTTTCGATACACTGTCTCACTTCATACTCACAAAACAAGTCTGGAAAATCCAACATATCCACGGTTTGTGATATAAAGTGCGTATTAAAGCCACAGCACACAACTGTTAGTGGAAATTGAACAGTCAACGGTACAACTTCACAAGTCTCGCAGTGCTGTGTCATGTGATACAATTCACAACCTACATTCTCCAGACTATTAGAATAtcacattatataaatacatatcaagACATAGactgtgtatatgtttgtgtatacTACATGTGTATATAGTGCACGTATGTATTCAAACATCTGTACATAAAATCCTGTATTGTTTTATGTCCCCAAATTTAAATACCAAGCACCAAGTACGGGTCCCATTTTTATAAGATAGTATTTGTTCTATATGGTAGTATTGTTTTGGATAATATTGATAGTGgcgtatttattttcaataaaagctTTGCAGAGAGCACGTTttgttcataaaaatatatatacaaagtacaagaaacaatacagaataaaaaaataaaaatctgcccACAGTGCAAACAGAGCCTTGGGTGCGTTTCATACGATTCGGTGCACCGAACTTTAAATCTGGACCTTGAAATTGCACTTTTCTTTTACCTCGAAAACACATGAACCTCATGTGTAAATGTGATGATCGTAAGGAACAGAGAGGAAGGTTTTCAAGGCCGGCCTGACTGCCACATCAGCGTGGAGAGGACTAGGGAATAGCCAGCACAATTGTCATAGGAGAAAGGTTATCTACGCAGAAATCAAAGCTACGCTACCCTGAGGACTAGAAAACAGCGCTAACAACAGGTCAGCAAGGATCAGCGCGTAGCCGAGGGCtggatgtgtttttgttctaaTCGCAGTCGTTAAAAGGTGAAGACTTTCCTCTGACGGGGGAAAGCACAACCACATAAGGTGGCCAGATGGGGTGCCAGGGGAAAGCAGTGTCCGACTTGCTGTGCAAGTTCAGCCACCCAGTTCAGGGAAGATGTCTCTCGTTATCTGTTGCGACATGTATTGAGCAGCCAGACATTCAGAAGCAGTAATACGGAAGCCCAGGCTTTGAGTGCCATTGAGTTTTTGGATGTGATActccaataaatattttgtaatgctatTTATGTGGTAACTACTAAAGTGAGAGAAAATCCCTCTGCCTCCCTAATCTCAAATCTGTGTTCTACTCCTACTTGTTTTTTCCACAAGCCGCGGGGAAGCCGGCCAAAGGACACCCAGTGGGTCTTGCttattaaattgaatgtttatctctgtctgtccctctatATAAGAATGTCTGTTTATATACATCTGGGTCTTATCTATACTTTCATTCAACTCATGTTT

Function

GO:

id name namespace
GO:0004953 icosanoid receptor activity molecular_function
GO:0004954 prostanoid receptor activity molecular_function
GO:0004955 prostaglandin receptor activity molecular_function

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04658 Th1 and Th2 cell differentiation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151314 lncRNA downstream 20392 3008901 ~ 3020156 (-) True G120754
TU151294 lncRNA downstream 53769 2985573 ~ 2986779 (-) True G120746
TU151291 lncRNA downstream 87066 2953273 ~ 2953482 (-) True G120743
TU151243 lncRNA downstream 192611 2845382 ~ 2847937 (-) True AMCG00002078
TU151216 lncRNA downstream 344161 2696063 ~ 2696387 (-) False G120683
TU151354 lncRNA upstream 49276 3091776 ~ 3092899 (-) True G120789
TU151382 lncRNA upstream 134084 3176584 ~ 3176844 (-) False AMCG00002091
TU151407 lncRNA upstream 364985 3407485 ~ 3466461 (-) False AMCG00002097
TU151417 lncRNA upstream 450456 3492956 ~ 3494050 (-) True G120841
TU151419 lncRNA upstream 457781 3500281 ~ 3502928 (-) True G120842
AMCG00002083 mRNA downstream 79290 2956881 ~ 2961258 (-) True AMCG00002083
AMCG00002084 mRNA downstream 94395 2935521 ~ 2946153 (-) True AMCG00002084
AMCG00002085 mRNA downstream 109530 2921788 ~ 2931018 (-) True AMCG00002085
AMCG00002077 mRNA downstream 168275 2861912 ~ 2872273 (-) True AMCG00002077
AMCG00002079 mRNA downstream 183421 2856058 ~ 2857127 (-) True AMCG00002079
AMCG00002089 mRNA upstream 1148 3043648 ~ 3066913 (-) True AMCG00002089
AMCG00002090 mRNA upstream 45044 3087544 ~ 3089884 (-) True AMCG00002090
AMCG00002092 mRNA upstream 53220 3095720 ~ 3110908 (-) True AMCG00002092
AMCG00002094 mRNA upstream 70977 3113477 ~ 3128440 (-) False AMCG00002094
AMCG00002093 mRNA upstream 91608 3134108 ~ 3146480 (-) True AMCG00002093
TU151301 other downstream 35631 2995508 ~ 3004917 (-) True G120748
TU151271 other downstream 117327 2921252 ~ 2923221 (-) False AMCG00002085
TU151364 other upstream 70942 3113442 ~ 3127944 (-) True AMCG00002094
TU151499 other upstream 671367 3713867 ~ 3716252 (-) True G120907
TU151529 other upstream 741736 3784236 ~ 3786544 (-) True G120927
TU151612 other upstream 1172215 4214715 ~ 4219877 (-) True G120993
TU152605 other upstream 4793995 7836495 ~ 7839411 (-) True AMCG00002223

Expression Profile