RNA id: TU151354


Basic Information

Item Value
RNA id TU151354
length 1124
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G120789
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3091776 ~ 3092899 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNggagacaccgactcacagccatccaggagacatctttctgcgtgttCGTGAGGCTTATTTGAGTTATATCCGTCATATTTAGGCTTTAATCCCAGTTAAAGACCGGAAAGCAACTTACTGCTGGATCCAGACCAATCTGTTAGAATAGCGGTCTCCTCTGGGATGGCCGTTCAGGGCAGCAGAGTCAAACACTCGTCAACAGGATGAGATTGGACCAGACTTTATGACTgtagagagggaaggagggcaGTGAGATGTTATTGGGCGGTGTAAGACGTGATGAGCCCTCTCGCTCCTTTGCAAAGAGCACCACGggagcagtgcattgtgggcgGAGCACCGATCAAAGAAGACCGTTTTCTCCTCGGCCACAGCTGCTCAGCTACCTAGTGGTGGGGGCGTTTCATCTCCCACCAAATCCTGCCCTGCGCTGGTGGAAGACACTAGTGCGGTGAAGGTCCGTTGAGGCCAACAGCTGGAGAGTTTAATTGAAGATTGTTAGGACATCTCAAAATGTATGATTACAGAGTCCTCAGTTTAAGGTGGGTTGGCCGTGCAGCGCGGCAGCTTTAAATGAGTCTCCGTTGCTGTTACGATTGTCTTTGCTCGACATGAAGCTCGACCCACTTCCGTGCCAGCCTCGTTGTGGGGATCTGTCAAGATGGAGGTCTCTGTTATGATTGTACTTCATTTTGAaagtgtattgtatttataccTAGCCTGTTTATTGCCAAAACAAAGtcgtattttctttcttttcctgttttAGTCTTTGGTTACAGAATCTATTCACTTGTGAAGcgtttccttctttttttccaGAGGAGAAGCGTCCATTTTGGTTTTAGTCCACAATCATGGCCCGCGATCTTGGGCTGCCTCTCAGTGTCGCCGTGGGGCCCGAACGTGGCTCAGCGGTCCCAGCACAGTGGTTTCATCTGGACTCGGATgttttgtacagtattttttagaaatagaccttttttttatataaagaccaaaaaccaaacaaaaaaaaatatatgtaatttaaaagtacaaaaatgcCAGTTGGTCATCTTTTCAGGGAATACTAGTTTTTGTTAGATTGTAAAGTAACGTCAATAAAGatgaataatgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151321 lncRNA downstream 49276 3040548 ~ 3042500 (-) True G120760
TU151314 lncRNA downstream 71620 3008901 ~ 3020156 (-) True G120754
TU151294 lncRNA downstream 104997 2985573 ~ 2986779 (-) True G120746
TU151291 lncRNA downstream 138294 2953273 ~ 2953482 (-) True G120743
TU151243 lncRNA downstream 243839 2845382 ~ 2847937 (-) True AMCG00002078
TU151382 lncRNA upstream 83685 3176584 ~ 3176844 (-) False AMCG00002091
TU151407 lncRNA upstream 314586 3407485 ~ 3466461 (-) False AMCG00002097
TU151417 lncRNA upstream 400057 3492956 ~ 3494050 (-) True G120841
TU151419 lncRNA upstream 407382 3500281 ~ 3502928 (-) True G120842
TU151418 lncRNA upstream 407425 3500324 ~ 3502928 (-) False G120842
AMCG00002090 mRNA downstream 1892 3087544 ~ 3089884 (-) True AMCG00002090
AMCG00002089 mRNA downstream 24863 3043648 ~ 3066913 (-) True AMCG00002089
AMCG00002083 mRNA downstream 130518 2956881 ~ 2961258 (-) True AMCG00002083
AMCG00002084 mRNA downstream 145623 2935521 ~ 2946153 (-) True AMCG00002084
AMCG00002085 mRNA downstream 160758 2921788 ~ 2931018 (-) True AMCG00002085
AMCG00002092 mRNA upstream 2821 3095720 ~ 3110908 (-) True AMCG00002092
AMCG00002094 mRNA upstream 20578 3113477 ~ 3128440 (-) False AMCG00002094
AMCG00002093 mRNA upstream 41209 3134108 ~ 3146480 (-) True AMCG00002093
AMCG00002095 mRNA upstream 53705 3146604 ~ 3147047 (-) True AMCG00002095
AMCG00002091 mRNA upstream 80606 3173505 ~ 3186353 (-) True AMCG00002091
TU151301 other downstream 86859 2995508 ~ 3004917 (-) True G120748
TU151271 other downstream 168555 2921252 ~ 2923221 (-) False AMCG00002085
TU151364 other upstream 20543 3113442 ~ 3127944 (-) True AMCG00002094
TU151499 other upstream 620968 3713867 ~ 3716252 (-) True G120907
TU151529 other upstream 691337 3784236 ~ 3786544 (-) True G120927
TU151612 other upstream 1121816 4214715 ~ 4219877 (-) True G120993
TU152605 other upstream 4743596 7836495 ~ 7839411 (-) True AMCG00002223

Expression Profile