RNA id: TU151401


Basic Information

Item Value
RNA id TU151401
length 2591
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G120827
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3500337 ~ 3502927 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agttagattttatttacaaagtattttacaatttacagtttcaCAGAAACAGCTCTCTCTTCCGTCCCACTTCAGTTCCCCCAACACAGCGCCAATTTCTCCCGGCCAGCAAAGACCGCATCAAATAAGTCTGTGTACCAAACTAATAACATTGTTCTcgtttgttgtgtttgtttaaaaaaaagaaaaaagaaaaaaaagaacaagggAACAAACTTGTTTTCCTTTGGTAAATCCTTCTTTGTACAGTAgaatacacatatttacaaaACCACTGAACAAAACCGCCTGCCTCTGCAATTCAATTCCAACTGCAATGCTGCCTAAATTACATCCAGTTTTAAATCCTCAAtaacttacaaaaaaaacatcttcatagAAAAAAATCCACCAGGAATTACGTCTTGGTTACAGATATACTGAGGAAATGTGGCAGGACCaaacgggggaaaaaaaatacatagatcaggatcttcaaaatgtatacatttcaatgtatctCAAACGGCAAATCAAACGCATCTCGTCTCTGAACTCTTGCAACCGTCCAGTAATAAACGTTTTCAATTTCAAACAATGTTTTGAACTAAAAAAGGCTCAGTAACTAGAACCAATATTGggtagaaaatgtaataataaaaaataaaaaaaaaagcctttccGATTTATGGAATCTAAAACACGACTTAGTCTCTTATAACTGCCTTTTGACCAGACAAACCTAAATGTACATTGATATTTAATCAACCAGACTTTCTTCCCCTGCCAGTCAGAACCTCGCATTTAATCTCCCAGGTTTATATTGTCACCAGCTCGTCCTCTTTGCCTGTGCGGTTTCCGGTGTTGTAAGCGCTGCCTCCCGTGTACAAAACCTCACAGGAAATACAGGCTGCAGCACAGagaaagcaaatgaaaatgaaaaacgtGCCCTTAAACGGCTCAAAGGAGACCAAACGCACGGTACCGTCCACTGCCTGGCAGAACAAGATGGTTCTGCACACGAGCACCGCCGAGCAGCGCCTCCGAGCTGCACAGTGAACAccagagaaaaaacagaaccaaaACTTCAGCCCGTATCACGCGTTAGGGTATCCCACCTCTCCTGAACACAGAAGAGGGCATTAAAAAGACCTGCAGCTCAGTCCACGGGCTTAAGGAAGGCAGTAGGGGGACTCGCTCAATCGCTGGCCTATTGAGACGCTGACAGACATGCTTCAGGGGGCATAAAGCTGACAGGTTTTAGTCTGTCCTGTCCCCGGCCTGCGCTTCCCCAAACAGGATGAAATTAAACCCTAAAAAGAGTTTATATTCTTGCCTTCTCTGCTTCAGCAAAAGCTGAGAAGAGTCCCACTCAAAAATAAGTGAAGAGTCAAAACCTAGGTTGTCCGTGAAGTGACATTTTAAGAAGTCACAGAAACCGCCCTGTAGGGAATTCCTTAACACACACTTCCAAGTGTAAGCGATTGTCTTTGGGATACTTATGCTTTTTGTTTAGCATTTAACGATTAAATAAGCATTcatgtgcgtctgtgtgtggggggcggGGAGGGCTTTAATATGCAAGGACAAAAGAAAGGACACTGAATCACTGCTGGACATCCGATAacacagtgcattttaaattcctGTTCCTATCCGTCAAACAAGTCAGGCACTCCTCGGGGTAGATGTGCTTAAAACAGATCCGAAATTTGAGTCCCGAGAACAGGGGTGGTGATCCGGCGTGGGGTATCGCCAGCACCAGCGTTTTCAGGGTGAGAAAGGTCACTGTGAATAGTTTTGTGCAACAGGTGACCACAAGTGCTGGGCCTGTTcccttccccccaaaaaaactcAACCCCCAATCCCCTCTACAGCTCCAGTGACATTAAGGCACAACAGCATTACCCCCTCGACACAAGAGACAACTCGCCTCGGCCACACAAACCCGCTACTTGcttttgtcattaaaaaaataacaccttAAAGTCTGTATACAGAGACAGCAACCATTTGAGCTGTTTTTACTGTTGAtataaccccccaccccccaaaaacaaaactaaaatcatcAATTGTTCATCtatccttaaataaataactcactTCTGAAGCACAGCAGAGGAAATGGCGATACTGTGACTCAAGGAAGGTCAATGGGAGATGGACGCTGATCGGTCAGACCCACTAGAGGACCCCAGTTTATTTCTGGTCAGACGGTACCGAGAACCCCTATACTTGTTCGTGGGACCCCTGTACTTTTCTCTTTGAGCTTCCCTTCGTTTCTTATCAAAGGTGCTTCTTTAACACCATCGCCAATCCAGTCTTCAAGTACCTCCCCCCTGTCAAGTATTCATTTCGcatgatatatagatatacaagTATTTGAAATGGTGTCATTTTCCAGTGTACAGTAAAGACATTCATCTACAGACAGTCTAATCAGAATAATTAAATCACTGTCGGTCTTTCCCTCAGTAGTCTGTACAGCGATTGCCTTGCACACACGGGAGGGCAACCCTTATTTGGCAGGAGGGCGGGACAGggagtaaaaaagaaaaagggggaaaactATATACACAAAGTTCAATGTCGGGGTGTACTTGAAGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151397 lncRNA upstream 6270 3491280 ~ 3494067 (+) True G120823
TU151360 lncRNA upstream 383913 3113450 ~ 3116424 (+) True G120794
TU151340 lncRNA upstream 399291 3100278 ~ 3101046 (+) True G120779
TU151339 lncRNA upstream 400195 3099607 ~ 3100142 (+) True G120778
TU151335 lncRNA upstream 407438 3091794 ~ 3092899 (+) True G120774
TU151531 lncRNA downstream 285789 3788716 ~ 3791941 (+) True G120928
TU151573 lncRNA downstream 437529 3940456 ~ 3940716 (+) True G120961
TU151589 lncRNA downstream 584232 4087159 ~ 4087472 (+) True G120974
TU151687 lncRNA downstream 1077927 4580854 ~ 4581879 (+) True G121044
TU151688 lncRNA downstream 1079046 4581973 ~ 4582280 (+) True G121045
AMCG00002100 mRNA upstream 10704 3479844 ~ 3489633 (+) True AMCG00002100
AMCG00002086 mRNA upstream 413044 3085012 ~ 3087293 (+) True AMCG00002086
AMCG00002087 mRNA upstream 460314 3025064 ~ 3040023 (+) True AMCG00002087
AMCG00002088 mRNA upstream 495619 2995378 ~ 3004718 (+) True AMCG00002088
AMCG00002082 mRNA upstream 513558 2967365 ~ 2986779 (+) True AMCG00002082
AMCG00002101 mRNA downstream 16388 3519315 ~ 3523845 (+) True AMCG00002101
AMCG00002098 mRNA downstream 32965 3535892 ~ 3542177 (+) True AMCG00002098
AMCG00002099 mRNA downstream 58691 3561618 ~ 3562267 (+) True AMCG00002099
AMCG00002107 mRNA downstream 86440 3589367 ~ 3594982 (+) True AMCG00002107
AMCG00002106 mRNA downstream 103958 3606885 ~ 3618192 (+) True AMCG00002106
TU151290 other upstream 540862 2956908 ~ 2959475 (+) True G120742
TU151011 other upstream 1559521 1924022 ~ 1940816 (+) True G120518
TU150681 other upstream 2507573 693622 ~ 992764 (+) True AMCG00002019
TU150678 other upstream 2816011 682670 ~ 684326 (+) False AMCG00002019
TU151426 other downstream 30887 3533814 ~ 3536428 (+) False AMCG00002098
TU151430 other downstream 34692 3537619 ~ 3539554 (+) False AMCG00002098
TU151873 other downstream 1715903 5218830 ~ 5223498 (+) True AMCG00002152
TU152254 other downstream 3083727 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other downstream 3083727 6586654 ~ 6602608 (+) True AMCG00002190

Expression Profile