RNA id: TU151419


Basic Information

Item Value
RNA id TU151419
length 2648
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G120842
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3500281 ~ 3502928 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGTCTTCAAGTACACCCCGACATTGAACTTTGTGTATATagttttccccctttttcttttttactccCTGTCCCGCCCTCCTGCCAAATAAGGGTTGCCCTCCCGTGTGTGCAAGGCAATCGCTGTACAGACTACTGAGGGAAAGACCGACAGTGATTTAATTATTCTGATTAGACTGTCTGTAGATGAATGTCTTTACTGTACACTGGAAAATGACACCATTTCAAATActtgtatatctatatatcatgCGAAATGAATACTTGACAGGGGGGAGGTACTTGAAGACTGGATTGGCGATGGTGTTAAAGAAGCACCTTTGATAAGAAACGAAGGGAAGCTCAAAGAGAAAAGTACAGGGGTCCCACGAACAAGTATAGGGGTTCTCGGTACCGTCTGACCAGAAATAAACTGGGGTCCTCTAGTGGGTCTGACCGATCAGCGTCCATCTCCCATTGACCTTCCTTGAGTCACAGTATCGCCATTTCCTCTGCTGTGCTTCAGAagtgagttatttatttaaggataGATGAACAATTgatgattttagttttgtttttggggggtggggggttataTCAACAGTAAAAACAGCTCAAATGGTTGCTGTCTCTGTATACAGACTTTaaggtgttatttttttaatgacaaaagCAAGTAGCGGGTTTGTGTGGCCGAGGCGAGTTGTCTCTTGTGTCGAGGGGGTAATGCTGTTGTGCCTTAATGTCACTGGAGCTGTAGAGGGGATTGGGGGTTgagtttttttggggggaagggAACAGGCCCAGCACTTGTGGTCACCTGTTGCACAAAACTATTCACAGTGACCTTTCTCACCCTGAAAACGCTGGTGCTGGCGATACCCCACGCCGGATCACCACCCCTGTTCTCGGGACTCAAATTTCGGATCTGTTTTAAGCACATCTACCCCGAGGAGTGCCTGACTTGTTTGACGGATAGGAACaggaatttaaaatgcactgtgtTATCGGATGTCCAGCAGTGATTCAGTGTCCTTTCTTTTGTCCTTGCATATTAAAGCCCTCCccgccccccacacacagacgcacatgAATGCTTATTTAATCGTTAAATGCTAAACAAAAAGCATAAGTATCCCAAAGACAATCGCTTACACTTGGAAGTGTGTGTTAAGGAATTCCCTACAGGGCGGTTTCTGTGACTTCTTAAAATGTCACTTCACGGACAACCTAGGTTTTGACTCTTCACTTATTTTTGAGTGGGACTCTTCTCAGCTTTTGCTGAAGCAGAGAAGGCAAGAATATAAACTCTTTTTAGGGTTTAATTTCATCCTGTTTGGGGAAGCGCAGGCCGGGGACAGGACAGACTAAAACCTGTCAGCTTTATGCCCCCTGAAGCATGTCTGTCAGCGTCTCAATAGGCCAGCGATTGAGCGAGTCCCCCTACTGCCTTCCTTAAGCCCGTGGACTGAGCTGCAGGTCTTTTTAATGCCCTCTTCTGTGTTCAGGAGAGGTGGGATACCCTAACGCGTGATACGGGCTGAAGTtttggttctgttttttctctggTGTTCACTGTGCAGCTCGGAGGCGCTGCTCGGCGGTGCTCGTGTGCAGAACCATCTTGTTCTGCCAGGCAGTGGACGGTACCGTGCGTTTGGTCTCCTTTGAGCCGTTTAAGGGCacgtttttcattttcatttgctttctCTGTGCTGCAGCCTGTATTTCCTGTGAGGTTTTGTACACGGGAGGCAGCGCTTACAACACCGGAAACCGCACAGGCAAAGAGGACGAGCTGGTGACAATATAAACCTGGGAGATTAAATGCGAGGTTCTGACTGGCAGGGGAAGAAAGTCTGGTTGATTAAATATCAATGTACATTTAGGTTTGTCTGGTCAAAAGGCAGTTATAAGAGACTAAGTCGTGTTTTAGATTCCATAAATCggaaaggcttttttttttattttttattattacattttctaccCAATATTGGTTCTAGTTACTGAGCCTTTTTTAGTTCAAAACATTGTTTGAAATTGAAAACGTTTATTACTGGACGGTTGCAAGAGTTCAGAGACGAGATGCGTTTGATTTGCCGTTTGagatacattgaaatgtatacattttgaagatcctgatctatgtattttttttcccccgtttGGTCCTGCCACATTTCCTCAGTATATCTGTAACCAAGACGTAATTCCTGGTGGATTTTTTTctatgaagatgttttttttgtaagttaTTGAGGATTTAAAACTGGATGTAATTTAGGCAGCATTGCAGTTGGAATTGAATTGCAGAGGCAGGCGGTTTTGTTCAGTGGTtttgtaaatatgtgtattcTACTGTACAAAGAAGGATTTACCAAAGGAAAACAAGTTTGTTcccttgttcttttttttcttttttcttttttttaaacaaacacaacaaacgAGAACAATGTTATTAGTTTGGTACACAGACTTATTTGATGCGGTCTTTGCTGGCCGGGAGAAATTGGCGCTGTGTTGGGGGAACTGAAGTGGGACGGAAGAGAGAGCTGTTTCTGtgaaactgtaaattgtaaaatactttgtaaataaaatctaactattgattattttaatctgcAACAAGGGTCTGGTGTTAATTAGCATTGCACACATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151417 lncRNA downstream 6231 3492956 ~ 3494050 (-) True G120841
TU151407 lncRNA downstream 33820 3407485 ~ 3466461 (-) False AMCG00002097
TU151382 lncRNA downstream 323437 3176584 ~ 3176844 (-) False AMCG00002091
TU151354 lncRNA downstream 407382 3091776 ~ 3092899 (-) True G120789
TU151321 lncRNA downstream 457781 3040548 ~ 3042500 (-) True G120760
TU151429 lncRNA upstream 32894 3535822 ~ 3536525 (-) True G120849
TU151434 lncRNA upstream 35834 3538762 ~ 3540826 (-) True G120853
TU151516 lncRNA upstream 197564 3700492 ~ 3704364 (-) True G120914
TU151590 lncRNA upstream 584180 4087108 ~ 4087418 (-) True G120975
TU151682 lncRNA upstream 1064511 4567439 ~ 4569294 (-) True G121039
AMCG00002104 mRNA downstream 1475 3496159 ~ 3498806 (-) True AMCG00002104
AMCG00002097 mRNA downstream 49034 3439045 ~ 3451247 (-) True AMCG00002097
AMCG00002096 mRNA downstream 225363 3274423 ~ 3274918 (-) True AMCG00002096
AMCG00002091 mRNA downstream 313928 3173505 ~ 3186353 (-) True AMCG00002091
AMCG00002095 mRNA downstream 353234 3146604 ~ 3147047 (-) True AMCG00002095
AMCG00002102 mRNA upstream 118 3503046 ~ 3510980 (-) True AMCG00002102
AMCG00002103 mRNA upstream 24424 3527352 ~ 3533819 (-) True AMCG00002103
AMCG00002108 mRNA upstream 138254 3641182 ~ 3661770 (-) True AMCG00002108
AMCG00002113 mRNA upstream 265227 3768155 ~ 3777213 (-) True AMCG00002113
AMCG00002116 mRNA upstream 286130 3789058 ~ 3794546 (-) True AMCG00002116
TU151364 other downstream 372337 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 495364 2995508 ~ 3004917 (-) True G120748
TU151271 other downstream 577060 2921252 ~ 2923221 (-) False AMCG00002085
TU151499 other upstream 210939 3713867 ~ 3716252 (-) True G120907
TU151529 other upstream 281308 3784236 ~ 3786544 (-) True G120927
TU151612 other upstream 711787 4214715 ~ 4219877 (-) True G120993
TU152605 other upstream 4333567 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 6328983 9831911 ~ 9833224 (-) True AMCG00002276

Expression Profile