RNA id: TU151612


Basic Information

Item Value
RNA id TU151612
length 832
RNA type TUCP
GC content 0.41
exon number 2
gene id G120993
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 4214715 ~ 4219877 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TtctcttaatgtttttattgtcatttcatAAATACCGAAGCTGTACATATCGTCAGTCTGGATCTGATTCAAGCACAATGCAGAAAGCAAAGCCTGCCAATgagaaagaaaaccaagagaAGTGACCACAaccattaatatatacaaaGGGCAGAGTATGTACAGACAGAAGGGATGGTGCATTGATTTCCCACAGTGAAGATGTACAGTCTGCTAGTaacagtatatttatacataattccTCAAAAAGCATCTACAGTACAAATAAAAACCGTATCTTTTAGAGATGGGTGAAACTACAGAGACTTCAAATGGCAACTCGTCTCGTAGACCAACTCTAGACCTCCTTTTATGTTCgatgcagttattttaaaaaaggccagaggaaatcaaaagaaaaagtcTTAGTCTGCCAAGCGAgcgtgtgcttttttttttaaagtttttattattttacttttgcttCGTTAAATGTATTACTGGTTTATCTATGAGCGCATTTCCctttacactctctctctctctttgcttcTCTGCTTTTCATTGGTTTGGATTGTATCTACTCTTGTGTGTAATTCTCAGTTTgtgtattggtttgttttgaggATGACTTGCACTCCAGGACCGTCACTTTGCCGATCCCATGCGTCGGTTTCTCATTCAGTAAAAGCTCAAGCAAATAGAGGAACAGGCAAAGGCCGAGGGGCGGAGCCAGGCAGGCCCCCCGCGGACAGCCCTGTTAGGATCGGTAGTCCTTTTTGCTGTAAGGTTTGTTGCCCAGAATGCTGTCCACCTCGTGTACAATGGAAGAAGATAACTTCGGAAGAACCTG

Function

GO:

id name namespace
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044422 obsolete organelle part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0032991 protein-containing complex cellular_component

KEGG:

id description
ko00240 Pyrimidine metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151590 lncRNA downstream 127297 4087108 ~ 4087418 (-) True G120975
TU151516 lncRNA downstream 510351 3700492 ~ 3704364 (-) True G120914
TU151434 lncRNA downstream 673889 3538762 ~ 3540826 (-) True G120853
TU151429 lncRNA downstream 678190 3535822 ~ 3536525 (-) True G120849
TU151419 lncRNA downstream 711787 3500281 ~ 3502928 (-) True G120842
TU151682 lncRNA upstream 347562 4567439 ~ 4569294 (-) True G121039
TU151778 lncRNA upstream 496715 4716592 ~ 4722181 (-) True G121111
TU151835 lncRNA upstream 890725 5110602 ~ 5116017 (-) True G121151
TU151836 lncRNA upstream 908161 5128038 ~ 5137006 (-) True G121152
TU151881 lncRNA upstream 1007797 5227674 ~ 5228131 (-) True G121188
AMCG00002120 mRNA downstream 268160 3945137 ~ 3946555 (-) True AMCG00002120
AMCG00002122 mRNA downstream 294374 3919233 ~ 3920341 (-) True AMCG00002122
AMCG00002121 mRNA downstream 296528 3911198 ~ 3918187 (-) True AMCG00002121
AMCG00002117 mRNA downstream 379888 3826176 ~ 3834827 (-) True AMCG00002117
AMCG00002118 mRNA downstream 390545 3817822 ~ 3824170 (-) True AMCG00002118
AMCG00002131 mRNA upstream 125 4220002 ~ 4253397 (-) True AMCG00002131
AMCG00002132 mRNA upstream 194405 4414282 ~ 4423276 (-) True AMCG00002132
AMCG00002136 mRNA upstream 351099 4570976 ~ 4579172 (-) True AMCG00002136
AMCG00002139 mRNA upstream 374275 4594152 ~ 4600114 (-) True AMCG00002139
AMCG00002138 mRNA upstream 382529 4602406 ~ 4636492 (-) True AMCG00002138
TU151529 other downstream 428171 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 498463 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 1086771 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 1209798 2995508 ~ 3004917 (-) True G120748
TU151271 other downstream 1291494 2921252 ~ 2923221 (-) False AMCG00002085
TU152605 other upstream 3616618 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 5612034 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 5622218 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 7305016 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 7447878 11667755 ~ 11685089 (-) False AMCG00002327

Expression Profile