RNA id: TU151682


Basic Information

Item Value
RNA id TU151682
length 1821
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G121039
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 4567439 ~ 4569294 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGATttcgtgtttttattttagaattcaagttaaaaaaaaaaaagttatattacaAAACGGTTCTTTTGATAAATACAAACTTTAAACAGAGTTgtatacatgaaaaacaGGGCTCGGGGCCCTAGCGGTATAGACTCGGTGACACCTCAGAGCTCCAGCCTTCATCTCGCttacaaaacaaaccttttcCATGAGTATTGAAATGCTTGCAACGTAGTTATAAGTCACAGTCAGAAGTGATTCCAGCAAAAAACAGAATATGTACTGTGGATGTACTGAGTATGTACACCAAGCTGGTTAACAGCGGTTTAATTGCAGCATTGCTtcggttttcattttcagtgtgaaAAGAGGAAACTAAGATCTGTGGCAAGCTGAGGCAAACGCACCTGTAAAGTTGATGTAAAATTTAATCTTAAAGTCATCACAGGGGACGGTTAACTCAAAATAGTCATTTTGAACCATTCAGTATGTAAGTACCGATCTAATTGTGACAGAAGTGTGATATGACCCATCAGGTGACTTAAAACTGTAATATCTTCTTGAAGATAGAGTGAGATGACAAATACAGAACAGGCCTGTATTGAGCGAGTCAGTGAAGGGGAATGACAGACTCTGAgtttctttttatctttattcTGAATTGTGTCAAAAGAACagtgaacaaaaagaaaaaaaactgatctTCGAAAGAGCCATGAGATGCGTTGTCTTTGGAAACCAGCCGTTAATCACgaaaacatttaacacacaaatgaaaatggtgATGAaaaagaggaggggagaggagctGTAAGAAAGGGACCGTAGTGAACAGAAGACCACTTGAATGACAATTAAAAGTGATGAGAACGAGATTGAGGAACAAGGACAGGAATGTGTAGTTGACATGCATTCTGGCAGACTCACTTCTTTGTGGGAAGTGGAAACCTCACTTAAAGGAAAACAGACCAATCACCGAAACGTCATGAGCACccttaaaatgtacagtaaggCAGAAGCACCAttgcaagtgttttattattgtttgcagGGCCCTGACAGAGAACGTTCACTTCGCCTGGACCAGGACTCTGTAAACTAGCACCAATTTACCAGGCCAACCTTGGCCTGCTGAAAATGATTCAgcttatcattaataataaaagttcTCGTGTATAAACAATGAAACCCCGTGTcttagaaatcaaaatataaatatacgtttaaaaaataataataaaataaatccaaaacaCCACTGGATGCGAAGGACATACAGGTAATGGCTTGACTATTCACATTTCCTAATGAGAAAAAAGTTCTCATTGCTGGACATCCATCAAAATGTAGCTATGAACAGTTTCGGTGACTCCAGCGTGCCTTTGTGCCGTCACAGAAGCCCCTGAAGGTGTTGAGTGCACTCCCGTATTTCCATCCACATAACGTCACCACTACAGGGTCATCCAAACACGAGGGCCTCTCCGGGACCCTAAAAAGGGAAGCACcgttcacacacacaatgggaAGCCCTCCTGACCCGGGTGAGGTTTTTGTGCCGCAGTGGGCCGTGCAGATCTCAGAGTCTGGGCGTGAGCGCCGGTGCCAGGACCACCTCACTTGTTCGGATGCCATTTTTGCGCTGTGAGGGAGGTGGCCGATCTCGCCCCCCACCCCAGGCGCGGCTAGGAGTCCTTCAGCATGCTGATCCGGGCGTAGATCTTGAGCGCGGGGCCCAGCTTGATGTTCATGGCGCTCATGAGATGATCCTCCTTGAGCAGCAGCATGGCCTGGCCGTCGATCTCCTGCGAGCGGAACTCGTCGGCTATCTCCTGGCAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151590 lncRNA downstream 480021 4087108 ~ 4087418 (-) True G120975
TU151516 lncRNA downstream 863075 3700492 ~ 3704364 (-) True G120914
TU151434 lncRNA downstream 1026613 3538762 ~ 3540826 (-) True G120853
TU151429 lncRNA downstream 1030914 3535822 ~ 3536525 (-) True G120849
TU151419 lncRNA downstream 1064511 3500281 ~ 3502928 (-) True G120842
TU151778 lncRNA upstream 147298 4716592 ~ 4722181 (-) True G121111
TU151835 lncRNA upstream 541308 5110602 ~ 5116017 (-) True G121151
TU151836 lncRNA upstream 558744 5128038 ~ 5137006 (-) True G121152
TU151881 lncRNA upstream 658380 5227674 ~ 5228131 (-) True G121188
TU151991 lncRNA upstream 1288707 5858001 ~ 5861642 (-) True G121271
AMCG00002132 mRNA downstream 144163 4414282 ~ 4423276 (-) True AMCG00002132
AMCG00002131 mRNA downstream 314042 4220002 ~ 4253397 (-) True AMCG00002131
AMCG00002120 mRNA downstream 620884 3945137 ~ 3946555 (-) True AMCG00002120
AMCG00002122 mRNA downstream 647098 3919233 ~ 3920341 (-) True AMCG00002122
AMCG00002121 mRNA downstream 649252 3911198 ~ 3918187 (-) True AMCG00002121
AMCG00002136 mRNA upstream 1682 4570976 ~ 4579172 (-) True AMCG00002136
AMCG00002139 mRNA upstream 24858 4594152 ~ 4600114 (-) True AMCG00002139
AMCG00002138 mRNA upstream 33112 4602406 ~ 4636492 (-) True AMCG00002138
AMCG00002137 mRNA upstream 82001 4651295 ~ 4673352 (-) True AMCG00002137
AMCG00002141 mRNA upstream 172195 4741489 ~ 4747439 (-) True AMCG00002141
TU151612 other downstream 347562 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 780895 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 851187 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 1439495 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 1562522 2995508 ~ 3004917 (-) True G120748
TU152605 other upstream 3267201 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 5262617 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 5272801 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 6955599 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 7098461 11667755 ~ 11685089 (-) False AMCG00002327

Expression Profile