RNA id: TU151778


Basic Information

Item Value
RNA id TU151778
length 2497
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G121111
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 4716592 ~ 4722181 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gattttttaaacaattaaattactaaGTCACATATGAAGTGTATTCcctacaaatgtaaaaatacctttttttaattacagactTCAGTTTTGTAACTACAGCCCAAGTGGGCAATGCAATGGATTTATAGCCTTGTAATTAAGGATGGGTTTCAATGCAGCCATTAAGAGGCCATTTCCAACCGtgtttttgtctctctttcaaagccacaaaaattaaaaaggagatTAATTACAACGCAGAGCTGCATGCCTCGTCAATGATTAGCATTTATTGGGAGTGCCATTTATATTCaagcaatcacacacacaatataagaGCCATCACAACAAGATTTCCTTTTGTCTACAGTCAAAGCACATCGAAAAAGGTGTCTTGTTCAGATTCAAAATGAACCACACTGCTGGGGTTGAGGAGGGATGAAACCATTTGCCAGTATGGGAAAATTGgccagtattttgttttctcaataaGTCACATCCATTATTCAGAAGGCCTCCAAATTTTTGGAGCAGGAGATGGAAGTCTATACAAGCAAAACATATTAACAGGATCCTTAATCAGTGACAGGACTGTAAAACTGCTCAGaggaaaataagtgttttagtGTCCACTCTAGCTGGTTTTTGTAGTCCGTGTCATTCTTCATATAATCAAAATGAAGGGGgtcagatacacacacacatctcttcTTCACGTGCTTTCTTTTAGCCTAGACATTGTTTCTTACATATTCCCCCCAAATAGATGGAAAACATGACCTTTGACACCATTGCTGAATGGTTGGAGAAAGCGGTGCAATCCAGTGTGGTCAACAATGGCAATAACTCTATTCATAGATAGACTGGTAGTATTTTTGGGGTGAAGAGGTAGAtcatgattatattttaaacaatgatACCTAAAAACAGCTAGGCTAAAGGAATGCATTgttcacagttcagaataacgACCTTAATTTAGATTACACCTGCGATATCCCGTGTACAATCTGCACCCGCGGAATGGcacacaatacaaaagaaaacattttggttgATAAGGTTtgacatattttacatacaccCACAGGaaggtaatacatttaaaaatcaaacttaaaaacaaataggcTTTTGTCCTTTCTTATCTATTGGAGAGTAAGTGCATACATATAGTGAACTATAGacagttttggttttgttacactacacagctgtgtaaagttaatgtgtgtgtatacaatgCTGCAATCTAGCGATTTTGTTTAGCATTTCTGTTGAAAAGCAGCTTTTAACGGTTTTCCCTTTTTCTGACAGACTTACAATGTATCCTACAAACAAGAGTTCCTCGATTATACACAGGCTTCAGACAGCTGAGGTATTGTTACCAGCTTTAGAGACCTAAGTCATGATTTCAGAAGCTGGGAGCAAGTTGAACCAATAGTAGTGATGTAACTTACTTAGGAAATGTAACTCTTCTCTTTTCTAACACAATTTCTAGGCAATGACAAAAATGGCTTCTTTAGCAATCACTGATGCAAGGCTTGCGACAATTACTATCGATCGTTTCCTACCACCAACAGCCTGACTGTCCATCATCACTGGCCAAACTGTGAGGTGAGCAGGAGCCTATTTCAGACGGAATTGGAACATATTCAAAGCATTCAACTTGAAATCACTCTTTATTGGGTTTAGATTCATGTGGTGGCCGGTTTTCTTTGTGTTCCCAGACTAATTTTAAGTCATGAATAAATCAGCACCAGACATTGTAAATTGATCATATActggtaatgtttttttctttttcatgttccCCACAGTCAACTGGTGTTTTTGCTAGGTTGCCACAATGGTGCAACACTCTCATCCCTCCAGTGCTTTCCGGACATGTCAACAGcaatttttacataaaaaacagaCCCCTGTTTCGCACAGTGTAATTCTAGATACTGTATGTATAGGTTGTGGCTTTTGCTTTCAGGAATGAATGTCAGTAATTCTGTAAAAAATTCTGCAGCatccacttttttgtttgtgattcCAGTAGCAGATCCATAAAGctgtacaaaaatattaaaaataaaaataaaatgtcaaatttgaGATCGTAGCGTAGTCCAAAATCtatttttgttgtagtttttgtgttgttgtttttttaaagtacattacaGATTGTCTCTgttaaaaaagacagaaaggaaaacaaatagcCGGTCAGCACAGGAGCAGCCTCAGTGCCAGCACCGCTACGAGGCCGTGCAGCGCCAAGGCCACTGAAGGAGACGCAGAGTTTGTCGATAGGCAGTGGCGCTTGTTTTGGCCGATGCAGGTCGCGTATGCCATGGCGTGGGGGATGTAGTTCTGCTCCTGAACTCCGTGCAGCAGATGCGCCATGGGACCCTTCGAAAAAATGGCCACATCCTCCCCACCGTGCGTCTCCATCCGCAGAGGCACGGCGGACTGCGCCAGATAGTTGCTGTTTGCTGTGGATGAAAGACAGTTGACAGTTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151682 lncRNA downstream 147298 4567439 ~ 4569294 (-) True G121039
TU151590 lncRNA downstream 629174 4087108 ~ 4087418 (-) True G120975
TU151516 lncRNA downstream 1012228 3700492 ~ 3704364 (-) True G120914
TU151434 lncRNA downstream 1175766 3538762 ~ 3540826 (-) True G120853
TU151429 lncRNA downstream 1180067 3535822 ~ 3536525 (-) True G120849
TU151835 lncRNA upstream 388421 5110602 ~ 5116017 (-) True G121151
TU151836 lncRNA upstream 405857 5128038 ~ 5137006 (-) True G121152
TU151881 lncRNA upstream 505493 5227674 ~ 5228131 (-) True G121188
TU151991 lncRNA upstream 1135820 5858001 ~ 5861642 (-) True G121271
TU151999 lncRNA upstream 1149487 5871668 ~ 5874136 (-) True G121274
AMCG00002137 mRNA downstream 43240 4651295 ~ 4673352 (-) True AMCG00002137
AMCG00002138 mRNA downstream 80100 4602406 ~ 4636492 (-) True AMCG00002138
AMCG00002139 mRNA downstream 116478 4594152 ~ 4600114 (-) True AMCG00002139
AMCG00002136 mRNA downstream 137420 4570976 ~ 4579172 (-) True AMCG00002136
AMCG00002132 mRNA downstream 293316 4414282 ~ 4423276 (-) True AMCG00002132
AMCG00002141 mRNA upstream 19308 4741489 ~ 4747439 (-) True AMCG00002141
AMCG00002142 mRNA upstream 26987 4749168 ~ 4752332 (-) True AMCG00002142
AMCG00002144 mRNA upstream 75208 4797389 ~ 4811362 (-) True AMCG00002144
AMCG00002154 mRNA upstream 479237 5201418 ~ 5214408 (-) True AMCG00002154
AMCG00002153 mRNA upstream 530194 5252375 ~ 5254786 (-) True AMCG00002153
TU151612 other downstream 496715 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 930048 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 1000340 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 1588648 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 1711675 2995508 ~ 3004917 (-) True G120748
TU152605 other upstream 3114314 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 5109730 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 5119914 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 6802712 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 6945574 11667755 ~ 11685089 (-) False AMCG00002327

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU258671 True 2806 lncRNA 0.39 3 NC_035918.1 17053147 ~ 17056122 (-)