RNA id: TU151835


Basic Information

Item Value
RNA id TU151835
length 5396
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G121151
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 5110602 ~ 5116017 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttcttctctttttttcatttttccatttttttactaaacatatacacatatatatatccATCTTACAGTGTTTTCGTTAGTTTTACAGCATGGCTATTGGGATTTATATTACTTAAGCAAAAAGAGTCCATTTTGGTATAAATAGGAACAGTATAAAATGCTAAGAACAATATCATATTATTAGTTATAACAAAGGTGAGATGGTACCTAGAGATGCACTCACAATGTGTAGCCAGTAAGATTTGCCAATTCTCTTCTGCTTTAGGTTTGACGTCAATGTACTCGGTAGCAGCATATTGGGAGATATTCATAAAGAGTCAGGATGCACCGAGTCCGGCGCACGCCCATGCTTTATGAAGACAACCCACACTAAGTACACCATGTTCGAAGACTCAATTTCATTATCTGCTGTTTTGCCTGTCCTTTCATTTCTTAGTGGCTCCATATCCTGTTCTCCTTGTTCCTGCTGTTTTTAATCACTATCTGTCAGATTACAGactcccccccaaaaacacaaacaaatatctaACACAACCATATCAAAGCAGATTGTCAGGAAATGCAACGGGGGAAGCAATTTGGTGTTACATAGCGCCCAGCAGCCCACAGATATAAGGGATGCCCCCTCCCTACTCGTCTCTCCTCCGGCTTCATGCTGGGATATCTTTCCTACAGACATTTGGCCTGAAATTGATCGCTGGACGAACCACTGGAGCTCAATTGCTCAATCACAGGATCTGAACCCAGTAAGGAATGACATGGCAGGAAAAAGCAGCCGACTCAAACTCCCCTTTCAGGAAGTGGAACAAGGATGTGGAAAAGTAACAGTAGCATAGAGGACTCACTCTGTACCgtctttataaaaaaatatacatatgaatCTGAAAGTagaatcaaaaataataaaattacatgtcaaaaaagttaattcgttttttcttttgtattatcCTCAGTATCATCGTTATTACTATAAAGTcgcataaataaaaataaatgaaatccatAAGGGATGGCGGGGGATCGGGAGTGGGGTGGGGAGTTTCGGGAGAGGGATGGATTGCGCAGCATGCAACAGTTTGCAGAGAAGTATTTCAAAGAGcgataaaaaaatacagtgattCACTTCAAAATACAGGTACATTAATGTCACTGAAACTACACAGTAGTTATACTTTGGCTATGATGATGGACAGTCTAATTCTATGACAGAGGCCAGCCATTGCACATACGTGTTGCTATTCGCTGCCTTTTCTAGGAGAAGAGAGTTCTTCCGTTTAGGAGTTACAGAGTATAGGGGATGTGTTCAACGCCTCCATGTTCATTCAGTCCCAACACACACGCACCTCAATGTGCAGGTCTCAGAGGACGACGACATGCGAACGATAACAGTAACAAGATCGACAACGACAACGACAACAAATGGCCCCGATCATCAATATTATTCTCCAGATGAGTTTTCAAACACTGGAGTCTCTACACACACCGTCAACACTGTCACAACGCTCATCTGACACAGGGGGCCGCTGTGTAGAAATGTCGCGCCCCTCCGACATGACtgtgacatttaaaagcagGATATTGAAGACACTGCTTCACAATGCCGCCAGCGCCGCCACTTTGGTGGGATTCTCCCGACTCACAGACACGTGACACCAGACAGgaacagtcacacacagcagGTATGAGAGAAGAGTAACTACAGTGGAAGTTACAGCACTCGGTTGTACCTGGATTTTGAACGTGTCTCCTGGCTCTGCTCAAAATCTGAAGGGGAAGGTTGGGACCTGACGGAGAATCTCTCACAGACTACAAACTTGTGCAGCATGAGTAGGTCCTACGGACAAATCATTCACAATTTAGGGGTTGCAAACCAAACACTGCTGCTCTGTAAATAGCTTTCCAAGGTGTAGGACATGAAGGTTTAATTCGGGAACAATTGGGCATTCGGCTTTCGTTTTGCTATGTATCCCTTGGTCAATATTACATCGTCTATATGTTCTCTGTACGTCCTTGTCAATAAATCAAGTCAATAAATCTACCTCCCAAAAATCAAACACTAAGAGAGTATACCATCAGacacatttcacaatgcatCCATGACTTCAACATGATTGATTAGCTATCCCATATCTATTGAGTTTTGATTTACATATTGCGGAATGTCAGTTTAAGTCAAACTAATATATTTCTCAACTCTCAGGATCTCCCAAGTTTAAATCCAAATCCCTTCTGGAAAGACTGAAATTAAATGGGTCGTTAAATAACATCGTCAATAGTGTTTCCCGTAAGCTGACACAACCTATTTCACTACTGGATCGTCCTTGCATTTTGGTATCCTATCTTTCTGATCTTCTTTTCAATTATGTCATTCCATCcgtttttaattacaaatgcaatcCTGACATCGTCTCCTTGAAGACCCCTATGATTCTGAGCTTCACTGCTGTCCGGTGGAGGGAGTGAATGTGGGAAGATCATTTCGTGAAAGGCTTTTTAGCCCAGCTTCCCCATCAATCAATATCAGAGAGTAGTTACACAGAATCAATGTGAATAAGCAATAATTCAGTTTAGCAACCCCTAAACTAAAGTAAGACTGATGTGTTCCTCAGAAATCAAAATTATTTCATTACTATAACATGGTCTGGAAGGTACAGAGCATGAAATCAAAACTCATTTTGTTGAGTACAAGGAGCATCTTGGGCCAAGATATGAGTCCATGGGTTGTTATGCACAAATCAATGCTTTTATGATGTGAAATCCATCGAAACGACACACTCAGATAAGGTCAGCATGCAAAGCTTTTGGCCTCAGcaagaaataaagcaaacagacaaacagacaaacagaccaacaaacagacaaacacaagaTTCTGCTTTTTGGTCCAATATTAACCCCATGGTGATGTGAGACAAGGCCATAAATATGCTTTTTCCCCAGCACTTTAAAATAGGTAACTTATTCAATAGCACCACCTACTAATGAAACATAATCTCCTATGCGGTTAAAACCTCGGCATGATCCACAATTACACACACCTTTAACCCTTTCCTAAGAGTTAGTATTAAGTTCATAGCTTGATTAGTTCTAATTCATTCAGACGCCGTTCACTTGGAATTGCCTTCaaattaatgacattttaatacacagtaGGACTCACACAACCACTTTGATGGCAACTCTATCCATAATCTCTAAATTAATCGTTGGCAGACCTGGGcaatttcagttaattaaatggGTCACACGTTGCAATTATCGGTGCCTCTTCTTAATGAACTGATGTATGAATACTGCAGCAATAACACATGGATAACTCATGCACTGAATCTGAGATCTGCTGTTCATCACATCTATGACAAGGTCAGAGTGAAGGTTAGGGACAGGGTTTCACACTTGTTTTCAGGGACAGGGCTTGTACATCAGATCTACATCAGAAGTCAGTGAATGTGCATGAGGCGATCGTGTGTTATTCTTGTGGGATTCAGACTCATTTATTAAGAATCGGTGAccattattataaagtgttgcCAATAAATGGAGCCAAAGAGTCACAGAACCACTTTAAAAAGTGACCCTTTCACCGCTAAAGTGCAATTTGTGCTAATtgtaaagcatttcaaaatggtCAAATCATGATCACtgagtttaatttgtctttgacTGTATTTGAGATTGAAACTGATGTCTTTGTAATAGTAGTGCTGATTGAATTCACAAGTATTTTCTGAGagagttttttgtttagtttgtttggtGGTTGGGTGGATCTGAGCATTAAACACTAAGAGGCTCAGGAGTGGAGATTAAACAGTCAAAGTACTTGTTTTTGTTGCCTTTAGcgtcaaatgtttatttgatatttaatgCTCTCATTTCTTAACCTTTGAAATAGATGTGAGTTGTAACTGGTATCCAAATACCACACTGGTACACACTCACAACTCCACAACCTATGACAACTTGTCTGTTGAGAATCCTTGAGAACTTTATGAACcagttttttctttatgtagAAGGATGATCAATTTGTATGGTTGGTGTCTCCTGCTCTCAGATATTGCAAACATCGGTCTAACGGCAGAGAGGGTTATGGTTTCAAAGTTTGGCAGTTTTCCACAGAACTCGGCATCCTATGCAACCAGGCCTCCCACAGATACAATGTGACAGCTCCCATCGTGATAGTACTTCCCCATTGAACTGTGCATCTCCTCACTCACAGCTAACAGACTGCTGTTGCTCACACCAGAATCTATACATTAAGCAGATTGGAGACAAGTAGGTGAAGATGGTTGTGTAGTCCAATTAAATCCAACTGAAATATCAACTCTTTCACCTTAAAAGCATTATATTTCAGGTCAGTCTCCCTctcaactgtttatttttgattttctgtttgtttcctgATTCAGCTGAGGTCTGTTTTCAATCAAAAGTTTGGCCCACCTTTCAATCGCAATTCCCCACCTGATACTGATTTTAATTTCTCCTGGTAATCAGGAAGTCAAGATGAAAAGCCAGTTTTTGCCActggcaggtgggtcaaagttttgattgaatccggggcttggtaataataataataacaataataatacgtaTCTGTTACATATGGTCCTTTGGTCGTGCATTTTGAAGTTCAGACACACAATGGCAAATCGCACAAAGCTGGGGGTTCTCCTGTGATGGAGGAAGCTATCACAAACAAGTCGAAATGTGTTGTTTGTACAAGAGGCGTGATTCCATAGAATACTGGCTAACGAATACAAGACACATTTTAATCCCATCCTCATGGAGTGATTCATTACCCACAGATGTATCCCAGCACAATTCTGGGCAATATTATATAACAGCCACTGAATTAACAACACTGACCCTGTTCACCTCTTGACCCAAACCATCTGGTGCCTTAGATTTCACATGATAAGAGCATTGAACGGCTGCGTTTGTGTTTTTACTCTCGTTGCTTTTCTCAGAAGAATAAGGCGAACAGGGACGGGGACAGGGGTGAGGGGGTGAGGGGCTCGATCACTGGGAGAAGCAGCCTGGCTTATCCGCGGCCCCCAGAGCCCAGCTTGTCTGTGGCCCCCCAGAGCCCCAAGCCTCTCTCAATCGTCATTCTCCTCCTCGTCGCTCTTGTTGGCTTTGCTCCAGCGCTGGAAGCAGTGCACAGTGGAGGCTAGGAAGAAGCTGGCCAAGATGGCCGCCACAGAGACCGAGATGCCCGAGAAGATGATGATGAGATAGTCGGTGAGGGTGAGGGTCAGCTGGCACTCGCGGAAACTGTCCTCTGAGAGCAGGCTGAGCGCCACCCTGCGGCCGTCGACGGGGAGGGAGCACTCCATACCGTCCACTCCTGTGgggagagaaacaaagagaagttATGCGCTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151778 lncRNA downstream 388421 4716592 ~ 4722181 (-) True G121111
TU151682 lncRNA downstream 541308 4567439 ~ 4569294 (-) True G121039
TU151590 lncRNA downstream 1023184 4087108 ~ 4087418 (-) True G120975
TU151516 lncRNA downstream 1406238 3700492 ~ 3704364 (-) True G120914
TU151434 lncRNA downstream 1569776 3538762 ~ 3540826 (-) True G120853
TU151836 lncRNA upstream 12021 5128038 ~ 5137006 (-) True G121152
TU151881 lncRNA upstream 111657 5227674 ~ 5228131 (-) True G121188
TU151991 lncRNA upstream 741984 5858001 ~ 5861642 (-) True G121271
TU151999 lncRNA upstream 755651 5871668 ~ 5874136 (-) True G121274
TU152015 lncRNA upstream 817641 5933658 ~ 5937833 (-) True G121288
AMCG00002144 mRNA downstream 299240 4797389 ~ 4811362 (-) True AMCG00002144
AMCG00002142 mRNA downstream 358270 4749168 ~ 4752332 (-) True AMCG00002142
AMCG00002141 mRNA downstream 363163 4741489 ~ 4747439 (-) True AMCG00002141
AMCG00002137 mRNA downstream 437250 4651295 ~ 4673352 (-) True AMCG00002137
AMCG00002138 mRNA downstream 474110 4602406 ~ 4636492 (-) True AMCG00002138
AMCG00002154 mRNA upstream 85401 5201418 ~ 5214408 (-) True AMCG00002154
AMCG00002153 mRNA upstream 136358 5252375 ~ 5254786 (-) True AMCG00002153
AMCG00002155 mRNA upstream 147990 5264007 ~ 5286782 (-) True AMCG00002155
AMCG00002158 mRNA upstream 644817 5760834 ~ 5786032 (-) True AMCG00002158
AMCG00002157 mRNA upstream 688825 5804842 ~ 5827525 (-) True AMCG00002157
TU151612 other downstream 890725 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 1324058 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 1394350 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 1982658 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 2105685 2995508 ~ 3004917 (-) True G120748
TU152605 other upstream 2720478 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 4715894 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 4726078 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 6408876 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 6551738 11667755 ~ 11685089 (-) False AMCG00002327

Expression Profile