RNA id: TU151881



Basic Information


Item Value
RNA id TU151881
length 458
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G121188
representative True

Chromosome Information


Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 5227674 ~ 5228131 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTCGGGTTAAGGACATGACAAAGACATTCTTGTAAgatttattagattttattgATATAGTGTGCTGTTCAATTTGTGCGtcacatttgaaaaacaggATAAGTTCAAGATCAGGCATTTAAATAATACCCAAGATCTATGAgtctatatatttgtatccCCAGAgataaacaaatactgtagtGTTCATGAGCTTCACATATTAAGTTGTTGGATGATCCTTTATATAAATTAACACATCAGATAAGATACTTCATTTAATTGCAAGTATTATCATGTAAAGAGACATGAGACTTAAAATTTCTGTGCACACTGTCCCATTTCAAAGAGTCTTCACATAGTTCACAATGCTGTTCACGGCCGGTTTGGTCGAAGGGAAGGACAGCCAGCCTTGGTCCATGAAGCTCACGATCCCATGGAAGCCATCGGAAACATGGTACCAGGAGACGGGGATGCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU151836 lncRNA downstream 90668 5128038 ~ 5137006 (-) True G121152
TU151835 lncRNA downstream 111657 5110602 ~ 5116017 (-) True G121151
TU151778 lncRNA downstream 505493 4716592 ~ 4722181 (-) True G121111
TU151682 lncRNA downstream 658380 4567439 ~ 4569294 (-) True G121039
TU151590 lncRNA downstream 1140256 4087108 ~ 4087418 (-) True G120975
TU151991 lncRNA upstream 629870 5858001 ~ 5861642 (-) True G121271
TU151999 lncRNA upstream 643537 5871668 ~ 5874136 (-) True G121274
TU152015 lncRNA upstream 705527 5933658 ~ 5937833 (-) True G121288
TU152051 lncRNA upstream 747594 5975725 ~ 5979623 (-) False AMCG00002167
TU152141 lncRNA upstream 982454 6210585 ~ 6213660 (-) True G121384
AMCG00002154 mRNA downstream 13266 5201418 ~ 5214408 (-) True AMCG00002154
AMCG00002144 mRNA downstream 416312 4797389 ~ 4811362 (-) True AMCG00002144
AMCG00002142 mRNA downstream 475342 4749168 ~ 4752332 (-) True AMCG00002142
AMCG00002141 mRNA downstream 480235 4741489 ~ 4747439 (-) True AMCG00002141
AMCG00002137 mRNA downstream 554322 4651295 ~ 4673352 (-) True AMCG00002137
AMCG00002153 mRNA upstream 24244 5252375 ~ 5254786 (-) True AMCG00002153
AMCG00002155 mRNA upstream 35876 5264007 ~ 5286782 (-) True AMCG00002155
AMCG00002158 mRNA upstream 532703 5760834 ~ 5786032 (-) True AMCG00002158
AMCG00002157 mRNA upstream 576711 5804842 ~ 5827525 (-) True AMCG00002157
AMCG00002166 mRNA upstream 646651 5874782 ~ 5883711 (-) True AMCG00002166
TU151612 other downstream 1007797 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 1441130 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 1511422 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 2099730 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 2222757 2995508 ~ 3004917 (-) True G120748
TU152605 other upstream 2608364 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 4603780 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 4613964 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 6296762 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 6439624 11667755 ~ 11685089 (-) False AMCG00002327

Expression Profile