RNA id: TU151999


Basic Information

Item Value
RNA id TU151999
length 1566
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G121274
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 5871668 ~ 5874136 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTCCAAACATAATCCAAGGGAGAAGTGGTTTTTAAAACAGGACAACTCAGGTACAACATGAACCTTTTTTATTAACATctcaaaagaaataaaacaatttaaaaaaatcccaaaataacaagaaacagGCTAACTGACCCATGTAACACCGGCCTGAACAAAACTGATCACTGCTGTTGAAGAGTAGATCCTAATAAAGGCGCAATGTACTGTTGGCAAACAGGTCCCTGAAACAAAAGAGCTGGACAGTGATTTTCAATGGGAGGGAAACCCCCCAAATTAATTCCAACACACATGGGGGGTTTCTAGAGGTCAGACAACATTGTATTTTGGAGATAGAAGAGtttcatgcatattttatttttaaaaaggtattttttttttccaggagaATGTCTTTTTACATTGTGTAATCAACAGCTATgccaaattaatgtttttttgttgtgtttttttaataaagcaaaagcaCCTAAACAAAAGTAGCACTCTATCCTTGTAATCAATTGATATTACCACAATGGGCTTCATTAGCAGAGAGCTCTCTTAACATCAGGCCTGAGTTTCATTAAACGTGTGTGACGCTATCGCCTTGTAACCCAGAATAGGAAAGGTTGTGAAGTCAGTTACCATCACTAGCCAAGAGGAGAAATTAACAGATGGAATGTAATGGCACCCAGAGAGCGACCAATTTAATTGCACTGGGACTAAAACAGACCTGAACACAGAATAgactaattatgtttttttttttttttttttcccccatcaaACAAATATGGAGTGTTGAGTCTTCCCCTCGctcaatatttaaaatccacTCCGGCACGCTGCCTTTATTGATATAGCAcccattttatatacatacatatacatatagatacatctatatatacttATAGATACatctacatatatacacacacatatatagatctAGATAGATAGAACCAAGGTGAAAAAATAGGTATAAAACTTTCAGAACTACCTGGCTAGCGTTTGTTTCACCGAGGAGATCAGGAATGAGAGATGCACTTGTAGGAATGATAAGTGCgttcataaaacaaattcaaaaacaaacgTTCCCATTCGGAGAGAATTGAATATATTTCTATTCACCTGGAGCCATTGGCATTGTAAGACACTGAGGTGATCAGGTTGAGAGGAGCGGGCACAGTCTGGACGAGAGAAACATTTGACGAGGTAGCGCTTCGATTCGATTTTGACTATCTACCATGGGTACCTGGTACTATCGTGGTACACGTACGTTTGCCCTAATGAGGTGTCCTAATAGAGAGAGTGTGCTCTTGTCCAAGTGTTTCCCCCGCCCCCACCGCGGCCGCAGGGTGAGCGACAGAGCGAGTGCATTCTGGGATGGAATCAGTTGCCTCTCGGAGGTGAAAGGGCGGCACGGTGGCCCATCAGAGCATGCGAGGGTTGTACTCTGGCAGCTTCTTCAGCTTCTCCTGTTCCTGCTCCGAGTCATCCCGCGCGATCACGAGGGTGTGCGCGTAGCCCATCGCCACTGCTCCATGTAAACCCCATCCAGCGTCTTCACCTCCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151991 lncRNA downstream 10026 5858001 ~ 5861642 (-) True G121271
TU151881 lncRNA downstream 643537 5227674 ~ 5228131 (-) True G121188
TU151836 lncRNA downstream 734662 5128038 ~ 5137006 (-) True G121152
TU151835 lncRNA downstream 755651 5110602 ~ 5116017 (-) True G121151
TU151778 lncRNA downstream 1149487 4716592 ~ 4722181 (-) True G121111
TU152015 lncRNA upstream 59522 5933658 ~ 5937833 (-) True G121288
TU152051 lncRNA upstream 101589 5975725 ~ 5979623 (-) False AMCG00002167
TU152141 lncRNA upstream 336449 6210585 ~ 6213660 (-) True G121384
TU152160 lncRNA upstream 403332 6277468 ~ 6277902 (-) True G121403
TU152207 lncRNA upstream 508297 6382433 ~ 6385919 (-) True G121443
AMCG00002157 mRNA downstream 44143 5804842 ~ 5827525 (-) True AMCG00002157
AMCG00002158 mRNA downstream 85636 5760834 ~ 5786032 (-) True AMCG00002158
AMCG00002155 mRNA downstream 584886 5264007 ~ 5286782 (-) True AMCG00002155
AMCG00002153 mRNA downstream 616882 5252375 ~ 5254786 (-) True AMCG00002153
AMCG00002154 mRNA downstream 657260 5201418 ~ 5214408 (-) True AMCG00002154
AMCG00002166 mRNA upstream 646 5874782 ~ 5883711 (-) True AMCG00002166
AMCG00002164 mRNA upstream 14354 5888490 ~ 5903073 (-) True AMCG00002164
AMCG00002167 mRNA upstream 104342 5978478 ~ 6015393 (-) True AMCG00002167
AMCG00002173 mRNA upstream 159708 6033844 ~ 6085952 (-) True AMCG00002173
AMCG00002172 mRNA upstream 232054 6106190 ~ 6108484 (-) True AMCG00002172
TU151612 other downstream 1651791 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 2085124 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 2155416 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 2743724 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 2866751 2995508 ~ 3004917 (-) True G120748
TU152605 other upstream 1962359 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 3957775 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 3967959 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 5650757 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 5793619 11667755 ~ 11685089 (-) False AMCG00002327

Expression Profile