RNA id: TU152015


Basic Information

Item Value
RNA id TU152015
length 3888
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G121288
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 5933658 ~ 5937833 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGACATTTACAACATTGTACTATTTAGATATATGGCACtttataaaaagttaaaatatagtatttttggaataaaattgaataatatCAATCCCTGCACATAATTAGCTGCAACAATCAAGATGGGACCCCAGGGGTTGTGCCTCAGTCCTCTTTGTGGTCTCCAGTAACACCTGCACACGCACACGAACAGACAGGCCGGCAAAGGCTAGCGGGTGCCTGGACTCCACCCACAGCCGCCACGTCCCACGGATTGAGATAGACACACTCTCTCAATACCTCTGCCATTAATGAACATTCACACAGGCGGGGCAGAGAGAGGACCTGTTACAGCAAGAGGCACAGGCAGCCTTTGCATTTCCCCAGGTTAGAAACGGAGACGGACAGAAAGACGGATGATTGACTTGACAGATACAGACACCAAGAGTCCAGAATCcagctgttttttattgtactcCTTTAAACACAAACGGTTTTGTTGCATTCTGCCCATTTAAAACATCCCCACACCCTCGAAAGACACCTTCTGCTCCTCCCCTTCCTTTGCACAGAACCAATCAGAAAGCTGCAGAATTTCCACGCACAAGAAGTGATGCCATTTTGTTCATCTAAGGGTGCCAGTGACAGAGGTTAAGTTTTCTCATAGCAAAGTCATAGGAGGCAGGTTAAAAAGGCCCAGAGTCCCTCGATCAGAGAGACGGCTGAGTCGGATAAAGGCAGTCCTATTTTGTAAAATGAGCAAATCTCGGTCATACAGAATTAtatcaatcaaaaacaaaacaagaattagTCCGGGGCTGGCCTGATCTGTGCACCCTTTTAATGGAAACCCAAGAGAAACCAGTCAccttctttttttggtttttgctcTTCCAGTATCGCAGACCAAAGGCTGTGTTCACCCTGATGAAGGGTCTTTTTCAAAccaaatgcattgtgggaaatgttTGAAATCAATACCAAATGGAGATACATGCTTTAGTATAGATGTAGAACAGCCCTCATGGTAAACATGCCTCCCGCGTTCATCTTCGCACCACCTCTCCCCCCTGACAAGTAACAACATTCCTTGACTTTAAAACTCACGATCCTCACAGACATCTCGTAGACGTCGGTTGGATCAAACGCAGGTTCGATCCGTACGCACGCCTGAGAGCAGCGGTCAAGCCTGCGTTTGGTAATTGTCTCTCGCTGTGTGTGTACGTCCGTGTCATCCGCAGTTTGTGTGGAGAATGTTCTGGTTTGGCAGGCAGAGCAGGGGGGAAATGCACAGCACCAGAAGATGTGCTTGGAGATAAAGCTTagattaaacacaataaaatcatcctttctttttttttctttctttacaaaacaaaccaaaaaagcttTAAATCGATAAACACtccataaaaaagaaacatacatcAGCAGGGGGATAAACAAGAgctataaacaaattaaaatgcaaaaagaaagcTGGGATGATAGGGATGAGACGGAGAGGGGATAAGAGGAGCCCGACTCTGTGTGTTAGTGACCGCAGACTGCTTCAAAACGAGCACAAAGGACTACACCGTGCGTGCGCTACTGAACAAATCAGTGAAGAAGGGATGGACACAAAGTTGACAGTGAATGAGATATAAAGAGTAGAAGAGAATCTTAAAGGATCTTAATTTAGCCACCCAGTTCAGTTAGATCTCCTGTAATATCTTCCCTGGCTGTCTAGGGCCCACGTACTAAACCTTATCTTTGATCTCAATGAGAATCGAAACTAGAAAACCGATCACGGTGTTTAACACCTCACAGAATCAATGGCTTTCACACAGGACCGCCACCTCTAGCAGGTGGAAAAAGAGGCACCCAGAAATACAAACCACACAAAATATGTGTTGGTCAAGTAACGAATAAAAAAAGGTGGCAGGGGTTCTACAGCAGCTTCCTGGGACGAAGTGTGTTCGTTTTAATCTGAAAATCAGTTCTGGAGCATCATCAATAATGAACTCTGATCCGCTCCAGATATGCCATGAGGAAAGTTATATGGACACCTCATCTCATCTctacaaaaacaatacagttgAAAACAATGGCAAAAGAATCACCCTTAGTTCAGAGAACAGATGGCCACAGAATAAAACTATGCAATATGggatattgtgttttttgttctgttttttttaaatacagtatttgttaCATGTCTACAGCATAGCAGTTGTGAATTTTCTACtgctacataaaatatatatatatatatatatatatatgcgtatGAGTATTTTGGTGCGATCGTCTATAAAATACTAAGCAATCTAGATGGCTCCTATACAGTTAGTCCAATGCCGATAATTCAGGAATAATAGATCTACTGCCCAGAAGTGTCACTGAAAACCAAGCTCATACCTGgagcaaaaatagaaaaaacagtATCCCACAGTGGAAGATTTCTGAAACAGCATACGGCCTACACACTGATGTTAGAGtccccttcccctctccctctctatccccCCCTCAcacctatctctctctctctctctctctctctcaaaatatCTCTTCTCTTTGGTGTCTGCCCTGGGCCAGCCAGCGGCTTTCCATCACTCACTTCCAGGCagttctctccatctctTGTCCAAGTCAATCACTTTGGGGGGCGGGAGCTTGGCCAGTTCGGCCTTTTCCTTCATGATGTTATTCTTGTAGTCTAGAGcagcgagagaaagagataatttacaaacacacacaggacaataGTCACTAACAACATGTCTGTGATGTCTGGCTGCATGAAGCCTAGAAAATGAAGAGCAAAGCATCAATCCACTCCTTACACTGCCACCTCATTGGCCCGGCCGCAGCAGTGCCCCAGCCCACAGCTAGCGATGGCACAGGCGAGATAGTAGACAGTCCAGCCTATAGGATATATGTCTTACCCAGCCGGATCTCCTCATGATTGCAGATCTTCATCTCTGTAGCGTCCACCTCAAACTCACTGGCCATCGCTTGGCGCCTGCAGGTATATTAcggttattatcattatcattgtcatatttctttttaaaagcacatattTGTGAGCGTGGTGGCACCTTTTGTGTCATTTCTACTCCTTTCTCTGTACACTGCCCTCTATTACCAGGACGTTTTAAGGTTCTTGATATGGGGCCTACTGTGAGAGGGATTCAACAAACAGCCTGCGCATGCCTGAACAAAAGTGGAAATGGGAAACGCCAGCCCTTAATAAAATCCAGTTTGAGCTGGCCTTGTAAAAGGGTGAAATACAGAAAGGTCTCACTGTGCTAAAACAGAGAACCCTTAAATTCCATGATTTCTTGGACGCCGGTGTCCATGCACTTAGGTTAGAATATTCTGGAGAAGGCACTTGTCTTGTTTGAGCGAAGAggctatatgaaatatattgatCCCAGCTGTGCTGCAGTAGTTCCAGAGGAGAATCTGGAGATTCCATAACATGGATTGTTTTGGAATGATAATATTCTCTCATAAAAAGACACAACAGAAGCCTGGAGCAGATCCATCAGCGACATTTTCAGCTAAACAAGTAGAAGAGATGTTATTTCTGGAATCTGACAGAGGATATTGTCATCAGACGAGAAGTCTTTGGTGATGATCCCCACAGGATTCTTAAGAcattatttctttcattataatatttgcaCATCGTGGTAGATTGCcaggatttatatttttgcataaatGAGGCGTTGCATTCGGAGCTGAAACGGTCAAAGTGAAACTAGAATACAGGAAATCAGAGAAACTGTATCATGGTTAATACTGTGGTCGCTAAATCCATGCAGCAGTTACACCGGCCCGGGAGTGGCTCAGTGACGGAGAAGTAAGGAGAGACCCTCACCTCTCTGACTGGCGCAGGTCATATTCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151999 lncRNA downstream 59522 5871668 ~ 5874136 (-) True G121274
TU151991 lncRNA downstream 72016 5858001 ~ 5861642 (-) True G121271
TU151881 lncRNA downstream 705527 5227674 ~ 5228131 (-) True G121188
TU151836 lncRNA downstream 796652 5128038 ~ 5137006 (-) True G121152
TU151835 lncRNA downstream 817641 5110602 ~ 5116017 (-) True G121151
TU152051 lncRNA upstream 37892 5975725 ~ 5979623 (-) False AMCG00002167
TU152141 lncRNA upstream 272752 6210585 ~ 6213660 (-) True G121384
TU152160 lncRNA upstream 339635 6277468 ~ 6277902 (-) True G121403
TU152207 lncRNA upstream 444600 6382433 ~ 6385919 (-) True G121443
TU152212 lncRNA upstream 444600 6382433 ~ 6385919 (-) False G121443
AMCG00002164 mRNA downstream 30585 5888490 ~ 5903073 (-) True AMCG00002164
AMCG00002166 mRNA downstream 49947 5874782 ~ 5883711 (-) True AMCG00002166
AMCG00002157 mRNA downstream 106133 5804842 ~ 5827525 (-) True AMCG00002157
AMCG00002158 mRNA downstream 147626 5760834 ~ 5786032 (-) True AMCG00002158
AMCG00002155 mRNA downstream 646876 5264007 ~ 5286782 (-) True AMCG00002155
AMCG00002167 mRNA upstream 40645 5978478 ~ 6015393 (-) True AMCG00002167
AMCG00002173 mRNA upstream 96011 6033844 ~ 6085952 (-) True AMCG00002173
AMCG00002172 mRNA upstream 168357 6106190 ~ 6108484 (-) True AMCG00002172
AMCG00002177 mRNA upstream 309433 6247266 ~ 6247869 (-) True AMCG00002177
AMCG00002178 mRNA upstream 320214 6258047 ~ 6262305 (-) True AMCG00002178
TU151612 other downstream 1713781 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 2147114 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 2217406 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 2805714 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 2928741 2995508 ~ 3004917 (-) True G120748
TU152605 other upstream 1898662 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 3894078 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 3904262 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 5587060 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 5729922 11667755 ~ 11685089 (-) False AMCG00002327

Expression Profile