RNA id: TU152160


Basic Information

Item Value
RNA id TU152160
length 435
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G121403
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 6277468 ~ 6277902 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNGAAGTCAAGGCGTCCTCTGATTGCGTAGGAACTTATTGgttccattatttatttctgctacaCCACTGTGTAGGTTATCTGTACCGACCCTTTGTAAGGCGAGAGGTTCATATTCTCTAGTATTTTAAgagaaagtaatttaaattgatttagaGCATTGTTCTGCCGGTGCGTTATAACTATAGGTCTACAATGTTTGTAGCGATTTGCGTGTTGCATTATTCTATAGTGCAGGTGATTAAATAAGAAGTATagatatttttctttgcatACTGTATGGCAGAAGTTGTGTTTTCATTACGATATGTTGACTAAACAtccattattttgtaattttgccTTTTATAAAGGCGTGTGTtttctatattaaaaatatgctgtatgaatataattcaatattatatatttgcataataaattatatgaaatcGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152141 lncRNA downstream 63808 6210585 ~ 6213660 (-) True G121384
TU152051 lncRNA downstream 297845 5975725 ~ 5979623 (-) False AMCG00002167
TU152015 lncRNA downstream 339635 5933658 ~ 5937833 (-) True G121288
TU151999 lncRNA downstream 403332 5871668 ~ 5874136 (-) True G121274
TU151991 lncRNA downstream 415826 5858001 ~ 5861642 (-) True G121271
TU152207 lncRNA upstream 104531 6382433 ~ 6385919 (-) True G121443
TU152212 lncRNA upstream 104531 6382433 ~ 6385919 (-) False G121443
TU152214 lncRNA upstream 104531 6382433 ~ 6385919 (-) False G121443
TU152215 lncRNA upstream 129803 6407705 ~ 6407915 (-) True G121444
TU152216 lncRNA upstream 135111 6413013 ~ 6413274 (-) True G121445
AMCG00002178 mRNA downstream 15163 6258047 ~ 6262305 (-) True AMCG00002178
AMCG00002177 mRNA downstream 29599 6247266 ~ 6247869 (-) True AMCG00002177
AMCG00002172 mRNA downstream 168984 6106190 ~ 6108484 (-) True AMCG00002172
AMCG00002173 mRNA downstream 191516 6033844 ~ 6085952 (-) True AMCG00002173
AMCG00002167 mRNA downstream 262075 5978478 ~ 6015393 (-) True AMCG00002167
AMCG00002185 mRNA upstream 79755 6357657 ~ 6381431 (-) True AMCG00002185
AMCG00002187 mRNA upstream 150463 6428365 ~ 6447619 (-) True AMCG00002187
AMCG00002191 mRNA upstream 173372 6451274 ~ 6500272 (-) True AMCG00002191
AMCG00002193 mRNA upstream 388212 6666114 ~ 6667451 (-) True AMCG00002193
AMCG00002198 mRNA upstream 405130 6683032 ~ 6706524 (-) True AMCG00002198
TU151612 other downstream 2057591 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 2490924 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 2561216 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 3149524 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 3272551 2995508 ~ 3004917 (-) True G120748
TU152605 other upstream 1558593 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 3554009 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 3564193 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 5246991 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 5389853 11667755 ~ 11685089 (-) False AMCG00002327

Expression Profile