Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU152207 |
| length | 2459 |
| lncRNA type | inter_gene |
| GC content | 0.47 |
| exon number | 3 |
| gene id | G121443 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030136.1 |
| NCBI id | CM030136.1 |
| chromosome length | 27394605 |
| location | 6382433 ~ 6385919 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0008152 | metabolic process | biological_process |
| GO:0019538 | protein metabolic process | biological_process |
| GO:0043603 | cellular amide metabolic process | biological_process |
| GO:0043604 | amide biosynthetic process | biological_process |
| GO:1901564 | organonitrogen compound metabolic process | biological_process |
| GO:1901566 | organonitrogen compound biosynthetic process | biological_process |
| GO:0009058 | biosynthetic process | biological_process |
| GO:0009059 | macromolecule biosynthetic process | biological_process |
| GO:0043043 | peptide biosynthetic process | biological_process |
| GO:1901576 | organic substance biosynthetic process | biological_process |
| GO:0006412 | translation | biological_process |
| GO:0010467 | gene expression | biological_process |
| GO:0044237 | cellular metabolic process | biological_process |
| GO:0044238 | primary metabolic process | biological_process |
| GO:0044249 | cellular biosynthetic process | biological_process |
| GO:0044260 | cellular macromolecule metabolic process | biological_process |
| GO:0044267 | cellular protein metabolic process | biological_process |
| GO:0044271 | cellular nitrogen compound biosynthetic process | biological_process |
| GO:0071704 | organic substance metabolic process | biological_process |
| GO:0006518 | peptide metabolic process | biological_process |
| GO:0043170 | macromolecule metabolic process | biological_process |
| GO:0009987 | cellular process | biological_process |
| GO:0006807 | nitrogen compound metabolic process | biological_process |
| GO:0034641 | cellular nitrogen compound metabolic process | biological_process |
| GO:0034645 | cellular macromolecule biosynthetic process | biological_process |
| GO:0044391 | ribosomal subunit | cellular_component |
| GO:1990904 | ribonucleoprotein complex | cellular_component |
| GO:0022626 | cytosolic ribosome | cellular_component |
| GO:0022627 | cytosolic small ribosomal subunit | cellular_component |
| GO:0044445 | obsolete cytosolic part | cellular_component |
| GO:0005840 | ribosome | cellular_component |
| GO:0015935 | small ribosomal subunit | cellular_component |
| GO:0043228 | non-membrane-bounded organelle | cellular_component |
| GO:0043232 | intracellular non-membrane-bounded organelle | cellular_component |
| GO:0019843 | rRNA binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| id | description |
|---|---|
| ko03010 | Ribosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU152160 | lncRNA | downstream | 104531 | 6277468 ~ 6277902 (-) | True | G121403 |
| TU152141 | lncRNA | downstream | 168773 | 6210585 ~ 6213660 (-) | True | G121384 |
| TU152051 | lncRNA | downstream | 402810 | 5975725 ~ 5979623 (-) | False | AMCG00002167 |
| TU152015 | lncRNA | downstream | 444600 | 5933658 ~ 5937833 (-) | True | G121288 |
| TU151999 | lncRNA | downstream | 508297 | 5871668 ~ 5874136 (-) | True | G121274 |
| TU152215 | lncRNA | upstream | 21786 | 6407705 ~ 6407915 (-) | True | G121444 |
| TU152216 | lncRNA | upstream | 27094 | 6413013 ~ 6413274 (-) | True | G121445 |
| TU152218 | lncRNA | upstream | 34122 | 6420041 ~ 6424298 (-) | True | G121447 |
| TU152525 | lncRNA | upstream | 1175158 | 7561077 ~ 7562747 (-) | True | G121689 |
| TU152556 | lncRNA | upstream | 1271913 | 7657832 ~ 7658851 (-) | True | G121716 |
| AMCG00002185 | mRNA | downstream | 1002 | 6357657 ~ 6381431 (-) | True | AMCG00002185 |
| AMCG00002178 | mRNA | downstream | 120128 | 6258047 ~ 6262305 (-) | True | AMCG00002178 |
| AMCG00002177 | mRNA | downstream | 134564 | 6247266 ~ 6247869 (-) | True | AMCG00002177 |
| AMCG00002172 | mRNA | downstream | 273949 | 6106190 ~ 6108484 (-) | True | AMCG00002172 |
| AMCG00002173 | mRNA | downstream | 296481 | 6033844 ~ 6085952 (-) | True | AMCG00002173 |
| AMCG00002187 | mRNA | upstream | 42446 | 6428365 ~ 6447619 (-) | True | AMCG00002187 |
| AMCG00002191 | mRNA | upstream | 65355 | 6451274 ~ 6500272 (-) | True | AMCG00002191 |
| AMCG00002193 | mRNA | upstream | 280195 | 6666114 ~ 6667451 (-) | True | AMCG00002193 |
| AMCG00002198 | mRNA | upstream | 297113 | 6683032 ~ 6706524 (-) | True | AMCG00002198 |
| AMCG00002196 | mRNA | upstream | 327078 | 6712997 ~ 6713197 (-) | True | AMCG00002196 |
| TU151612 | other | downstream | 2162556 | 4214715 ~ 4219877 (-) | True | G120993 |
| TU151529 | other | downstream | 2595889 | 3784236 ~ 3786544 (-) | True | G120927 |
| TU151499 | other | downstream | 2666181 | 3713867 ~ 3716252 (-) | True | G120907 |
| TU151364 | other | downstream | 3254489 | 3113442 ~ 3127944 (-) | True | AMCG00002094 |
| TU151301 | other | downstream | 3377516 | 2995508 ~ 3004917 (-) | True | G120748 |
| TU152605 | other | upstream | 1450576 | 7836495 ~ 7839411 (-) | True | AMCG00002223 |
| TU153137 | other | upstream | 3445992 | 9831911 ~ 9833224 (-) | True | AMCG00002276 |
| TU153139 | other | upstream | 3456176 | 9842095 ~ 9853075 (-) | False | AMCG00002279 |
| TU153575 | other | upstream | 5138974 | 11524893 ~ 11527355 (-) | False | AMCG00002317 |
| TU153660 | other | upstream | 5281836 | 11667755 ~ 11685089 (-) | False | AMCG00002327 |
