RNA id: TU152212


Basic Information

Item Value
RNA id TU152212
length 687
lncRNA type inter_gene
GC content 0.51
exon number 4
gene id G121443
representative False

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 6382433 ~ 6385919 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGATATCTAGCAAGTAATCAATCATTTTAAGTGACATGAAATCACAGAAATCAAGTTTTACACCAAACCCACGTCACAGGGAACAGGCTTTCACTGGAACCCCCTCCACCCAAAAAGCAGAGGCCAGGCCAAGTGCGTTTTGTCcatattgacattttatttaatatacaaaacagGTGAAGAGATTAATCctcatcctcttcctcctcctcgtcctggTTGATCTGGAAGTATCGCAGCTCGTAGCTCTCCTTGGTGTTGGCCACCACGCGCAACCAGTCCCTCAGGTTGTTCTTCTTCAGGTACTTCTTGGTCAGATACTTCAGGTATCTTAGAGAAGGGGACCTCAGATGTCACCGTGATCTTGCTCTTGCTCCTCTCGATGGTCACCACGCCGCCGCCCAGGTTGCCGGCCTTCCCGTTCACCTTGATCCTCTCCTGCAGGAACTGCTCCTGGAGAAAAGTTCGCTGCGTCCATGATGCCATCTTCCACAGGGTGGGTGCAGTCCAGCGTGAACTTCAGCAcctgcttcttcttcttgccACCCTTGGTGCTTTGCTTTTTCCAGCGGAGCCATGTTGATTCACGAACTCAGAAAGGAAGAGGCATCCAACGCGCATGCGCTTTCATGTCGGCCTGGGTTTAATCGAAAGCAGAGCTCATCGATCCGATCCGTGACTCTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152160 lncRNA downstream 104531 6277468 ~ 6277902 (-) True G121403
TU152141 lncRNA downstream 168773 6210585 ~ 6213660 (-) True G121384
TU152051 lncRNA downstream 402810 5975725 ~ 5979623 (-) False AMCG00002167
TU152015 lncRNA downstream 444600 5933658 ~ 5937833 (-) True G121288
TU151999 lncRNA downstream 508297 5871668 ~ 5874136 (-) True G121274
TU152215 lncRNA upstream 21786 6407705 ~ 6407915 (-) True G121444
TU152216 lncRNA upstream 27094 6413013 ~ 6413274 (-) True G121445
TU152218 lncRNA upstream 34122 6420041 ~ 6424298 (-) True G121447
TU152525 lncRNA upstream 1175158 7561077 ~ 7562747 (-) True G121689
TU152556 lncRNA upstream 1271913 7657832 ~ 7658851 (-) True G121716
AMCG00002185 mRNA downstream 1002 6357657 ~ 6381431 (-) True AMCG00002185
AMCG00002178 mRNA downstream 120128 6258047 ~ 6262305 (-) True AMCG00002178
AMCG00002177 mRNA downstream 134564 6247266 ~ 6247869 (-) True AMCG00002177
AMCG00002172 mRNA downstream 273949 6106190 ~ 6108484 (-) True AMCG00002172
AMCG00002173 mRNA downstream 296481 6033844 ~ 6085952 (-) True AMCG00002173
AMCG00002187 mRNA upstream 42446 6428365 ~ 6447619 (-) True AMCG00002187
AMCG00002191 mRNA upstream 65355 6451274 ~ 6500272 (-) True AMCG00002191
AMCG00002193 mRNA upstream 280195 6666114 ~ 6667451 (-) True AMCG00002193
AMCG00002198 mRNA upstream 297113 6683032 ~ 6706524 (-) True AMCG00002198
AMCG00002196 mRNA upstream 327078 6712997 ~ 6713197 (-) True AMCG00002196
TU151612 other downstream 2162556 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 2595889 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 2666181 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 3254489 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 3377516 2995508 ~ 3004917 (-) True G120748
TU152605 other upstream 1450576 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 3445992 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 3456176 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 5138974 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 5281836 11667755 ~ 11685089 (-) False AMCG00002327

Expression Profile